Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP01_F_L18
         (485 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.     130   8e-33
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.         116   1e-28
AB095513-1|BAC76335.1|   39|Apis mellifera brood-complex protein.      48   5e-08
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   4.0  
AY588474-1|AAT94401.1|  104|Apis mellifera defensin 2 protein.         21   5.3  

>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score =  130 bits (314), Expect = 8e-33
 Identities = 57/116 (49%), Positives = 83/116 (71%)
 Frame = +3

Query: 138 MDDDQQFCLRWNNHQSTLVSVFDTLLEKGMHVDCTLAAEGQTLKAHKVVLSACSPYFESV 317
           M D Q FCLRWNN+QS++ S F+ L +    VD TLA +G++LKAH+VVLSACSPYF  +
Sbjct: 1   MVDTQHFCLRWNNYQSSITSAFENLRDDEDFVDVTLACDGRSLKAHRVVLSACSPYFREL 60

Query: 318 LSQQYDKHPIIILKDXKYAELRAMMDYMYRGEVNXSQDQLAALLKAXESLQIRGLS 485
           L     KHP+I+L+D  +++L A+++++Y GEVN  Q  L++ LK  E L++ GL+
Sbjct: 61  LKSTPCKHPVIVLQDVAFSDLHALVEFIYHGEVNVHQRSLSSFLKTAEVLRVSGLT 116


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score =  116 bits (279), Expect = 1e-28
 Identities = 55/112 (49%), Positives = 79/112 (70%), Gaps = 1/112 (0%)
 Frame = +3

Query: 150 QQFCLRWNNHQSTLVSVFDTLLEKGMHVDCTLAAEGQTLKAHKVVLSACSPYFESVLSQQ 329
           Q +CLRWNN+QS + SVF  LL+    VD TLA    +LKAHKVVLSACS YF+ +L   
Sbjct: 9   QHYCLRWNNYQSNMTSVFHQLLQTEAFVDVTLACNEASLKAHKVVLSACSSYFQKLLLSN 68

Query: 330 YDKHPIIIL-KDXKYAELRAMMDYMYRGEVNXSQDQLAALLKAXESLQIRGL 482
             KHP II+ +D  + +L+ +++++YRGE++ SQ +L +LLK  + L+I+GL
Sbjct: 69  PCKHPTIIMPQDVCFNDLKFIIEFVYRGEIDVSQAELQSLLKTADQLKIKGL 120


>AB095513-1|BAC76335.1|   39|Apis mellifera brood-complex protein.
          Length = 39

 Score = 48.0 bits (109), Expect = 5e-08
 Identities = 21/39 (53%), Positives = 26/39 (66%)
 Frame = +3

Query: 138 MDDDQQFCLRWNNHQSTLVSVFDTLLEKGMHVDCTLAAE 254
           M D Q FCLRWNN+QS++ S F+ L +    VD TLA E
Sbjct: 1   MVDTQHFCLRWNNYQSSITSAFENLRDDEDFVDVTLACE 39


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.8 bits (44), Expect = 4.0
 Identities = 8/10 (80%), Positives = 9/10 (90%)
 Frame = -3

Query: 195 KPASTDGCST 166
           KPAST GCS+
Sbjct: 888 KPASTPGCSS 897


>AY588474-1|AAT94401.1|  104|Apis mellifera defensin 2 protein.
          Length = 104

 Score = 21.4 bits (43), Expect = 5.3
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = +1

Query: 139 WMTINSSACGGTTISRR 189
           W++IN SAC    +++R
Sbjct: 73  WLSINHSACAIRCLAQR 89


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 115,812
Number of Sequences: 438
Number of extensions: 1958
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13297932
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)