Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP01_F_L15
(613 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_16632| Best HMM Match : HSP20 (HMM E-Value=1e-12) 68 5e-12
SB_21425| Best HMM Match : HSP20 (HMM E-Value=1.9e-26) 67 9e-12
SB_49292| Best HMM Match : HSP20 (HMM E-Value=1.9e-29) 60 2e-09
SB_38963| Best HMM Match : HSP20 (HMM E-Value=7.3e-26) 59 2e-09
SB_37349| Best HMM Match : HSP20 (HMM E-Value=7.3e-26) 59 2e-09
SB_21424| Best HMM Match : HSP20 (HMM E-Value=0) 58 7e-09
SB_3291| Best HMM Match : No HMM Matches (HMM E-Value=.) 58 7e-09
SB_58906| Best HMM Match : HSP20 (HMM E-Value=3e-26) 56 2e-08
SB_58907| Best HMM Match : HSP20 (HMM E-Value=4.2e-05) 47 1e-05
SB_24406| Best HMM Match : DUF536 (HMM E-Value=1.5) 33 0.24
SB_6144| Best HMM Match : SCP (HMM E-Value=4.6e-38) 32 0.42
SB_39858| Best HMM Match : Spectrin (HMM E-Value=2.6e-05) 30 1.3
SB_57433| Best HMM Match : RRM_1 (HMM E-Value=4.5e-24) 29 3.0
SB_13144| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.0
SB_40383| Best HMM Match : IQ (HMM E-Value=0.00047) 29 3.9
SB_9039| Best HMM Match : M (HMM E-Value=0.00046) 29 3.9
SB_5773| Best HMM Match : HA2 (HMM E-Value=3e-16) 28 6.9
SB_58334| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.1
SB_41429| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.1
SB_7933| Best HMM Match : GCC2_GCC3 (HMM E-Value=1.4e-18) 27 9.1
SB_26957| Best HMM Match : PDZ (HMM E-Value=0) 27 9.1
>SB_16632| Best HMM Match : HSP20 (HMM E-Value=1e-12)
Length = 210
Score = 68.1 bits (159), Expect = 5e-12
Identities = 32/76 (42%), Positives = 51/76 (67%), Gaps = 1/76 (1%)
Frame = +1
Query: 277 DKFQV-NLDVQHFSPEEISVKTADGYVIVEGKHEERQDEHGYISRQFTRRYALPENCNPD 453
DK ++ LDV+++ PEEIS+K G + ++GKH+ + EHGY + +F R Y LP+ +
Sbjct: 38 DKVEIATLDVKNYRPEEISLKVEHGRIKIDGKHKS-EGEHGYETSEFHRSYNLPDGVDVS 96
Query: 454 TVESRLSSDGVLTVIA 501
TV SR++ DG+L + A
Sbjct: 97 TVSSRITGDGLLHIEA 112
Score = 32.7 bits (71), Expect(2) = 0.044
Identities = 17/43 (39%), Positives = 25/43 (58%)
Frame = +1
Query: 418 RRYALPENCNPDTVESRLSSDGVLTVIAPRTPAATKNERAVPI 546
R + LP++ + D++ SRL DG L + A R T +ER V I
Sbjct: 161 RHFVLPKDVDMDSLVSRLGKDGKLYIEAKRILHPTPHERQVNI 203
Score = 21.4 bits (43), Expect(2) = 0.044
Identities = 8/14 (57%), Positives = 10/14 (71%)
Frame = +1
Query: 280 KFQVNLDVQHFSPE 321
+F V LDV FSP+
Sbjct: 142 RFTVTLDVSSFSPD 155
>SB_21425| Best HMM Match : HSP20 (HMM E-Value=1.9e-26)
Length = 185
Score = 67.3 bits (157), Expect = 9e-12
Identities = 37/94 (39%), Positives = 58/94 (61%), Gaps = 2/94 (2%)
Frame = +1
Query: 277 DKFQV-NLDVQHFSPEEISVKTADGYVIVEGKHEERQDEHGYISRQFTRRYALPENCNPD 453
DKFQ+ LDV+ F PEEI+ K +G + V G + + E G+ S++F R Y LPE +
Sbjct: 4 DKFQIATLDVREFKPEEITCKVENGKIKVSGL-QRHESEEGFDSKEFRRCYNLPEGVDES 62
Query: 454 TVESRLSSDGVLTVIA-PRTPAATKNERAVPITQ 552
++ +R++ DG+L V A ++P AT +A P T+
Sbjct: 63 SISTRIAEDGMLHVEALKKSPPATTENKA-PATK 95
Score = 61.7 bits (143), Expect = 5e-10
Identities = 35/98 (35%), Positives = 51/98 (52%), Gaps = 1/98 (1%)
Frame = +1
Query: 223 KQMAMANRDVGSTITSNKDKFQVNLDVQHFSPEEISVKTADGYVIVEGKHEERQDEHGYI 402
K+ A + + T + KF + LDV F PEE+ VK + V + E +EHG+
Sbjct: 80 KKSPPATTENKAPATKDDTKFTLALDVSDFKPEEVDVKVYGHELSVRARQE--CEEHGFF 137
Query: 403 S-RQFTRRYALPENCNPDTVESRLSSDGVLTVIAPRTP 513
+ RQF R + LP + DT+ RL DGVL + A + P
Sbjct: 138 TARQFNRHFVLPREVDMDTLVPRLGKDGVLYIEADKRP 175
>SB_49292| Best HMM Match : HSP20 (HMM E-Value=1.9e-29)
Length = 189
Score = 59.7 bits (138), Expect = 2e-09
Identities = 29/69 (42%), Positives = 44/69 (63%)
Frame = +1
Query: 295 LDVQHFSPEEISVKTADGYVIVEGKHEERQDEHGYISRQFTRRYALPENCNPDTVESRLS 474
LDV+ + PEEIS K +G V V+G+H + E G+ ++F R + LPE +P+ V SR+S
Sbjct: 12 LDVKEYRPEEISFKVENGVVKVQGRH-VNEGEFGFELKEFRRTFTLPEGIDPENVTSRIS 70
Query: 475 SDGVLTVIA 501
+ G L + A
Sbjct: 71 NHGHLHIEA 79
Score = 52.8 bits (121), Expect = 2e-07
Identities = 26/83 (31%), Positives = 44/83 (53%)
Frame = +1
Query: 268 SNKDKFQVNLDVQHFSPEEISVKTADGYVIVEGKHEERQDEHGYISRQFTRRYALPENCN 447
+ +DKF + +DV F PE I V+ ++V HE + H Y + F R++ LP +
Sbjct: 93 AKEDKFSMAIDVAGFPPESIKVQVLGNELLVNANHEVEHEGH-YHAMHFNRQFVLPREVD 151
Query: 448 PDTVESRLSSDGVLTVIAPRTPA 516
D++ +RL +G L A ++ A
Sbjct: 152 MDSLTTRLDKEGKLHFEAKKSVA 174
>SB_38963| Best HMM Match : HSP20 (HMM E-Value=7.3e-26)
Length = 190
Score = 59.3 bits (137), Expect = 2e-09
Identities = 29/79 (36%), Positives = 50/79 (63%), Gaps = 1/79 (1%)
Frame = +1
Query: 268 SNKDKFQV-NLDVQHFSPEEISVKTADGYVIVEGKHEERQDEHGYISRQFTRRYALPENC 444
+N++K ++ LDV+ + PEEIS K +G+V V+G+H + G+ ++F R +ALPE
Sbjct: 2 ANENKLEIAKLDVREYRPEEISFKVENGFVKVQGRH-VNEGPFGFELKEFRRTFALPEGV 60
Query: 445 NPDTVESRLSSDGVLTVIA 501
V++R+S+ G L + A
Sbjct: 61 EASNVKTRISNHGQLHIEA 79
Score = 53.2 bits (122), Expect = 2e-07
Identities = 26/86 (30%), Positives = 43/86 (50%)
Frame = +1
Query: 232 AMANRDVGSTITSNKDKFQVNLDVQHFSPEEISVKTADGYVIVEGKHEERQDEHGYISRQ 411
A+ D G + DKF + +DV F P+ I V+ ++V HE + H Y +
Sbjct: 82 ALPGPDGGEEESKGDDKFSMAMDVTGFPPDSIKVQVLGNELLVSANHEVEHEGH-YHAMH 140
Query: 412 FTRRYALPENCNPDTVESRLSSDGVL 489
F R++ LP + D++ +RL +G L
Sbjct: 141 FNRQFVLPREVDMDSLTTRLDKEGKL 166
>SB_37349| Best HMM Match : HSP20 (HMM E-Value=7.3e-26)
Length = 190
Score = 59.3 bits (137), Expect = 2e-09
Identities = 29/79 (36%), Positives = 50/79 (63%), Gaps = 1/79 (1%)
Frame = +1
Query: 268 SNKDKFQV-NLDVQHFSPEEISVKTADGYVIVEGKHEERQDEHGYISRQFTRRYALPENC 444
+N++K ++ LDV+ + PEEIS K +G+V V+G+H + G+ ++F R +ALPE
Sbjct: 2 ANENKLEIAKLDVREYRPEEISFKVENGFVKVQGRH-VNEGPFGFELKEFRRTFALPEGV 60
Query: 445 NPDTVESRLSSDGVLTVIA 501
V++R+S+ G L + A
Sbjct: 61 EASNVKTRISNHGQLHIEA 79
Score = 53.2 bits (122), Expect = 2e-07
Identities = 26/86 (30%), Positives = 43/86 (50%)
Frame = +1
Query: 232 AMANRDVGSTITSNKDKFQVNLDVQHFSPEEISVKTADGYVIVEGKHEERQDEHGYISRQ 411
A+ D G + DKF + +DV F P+ I V+ ++V HE + H Y +
Sbjct: 82 ALPGPDGGEEESKGDDKFSMAMDVTGFPPDSIKVQVLGNELLVSANHEVEHEGH-YHAMH 140
Query: 412 FTRRYALPENCNPDTVESRLSSDGVL 489
F R++ LP + D++ +RL +G L
Sbjct: 141 FNRQFVLPREVDMDSLTTRLDKEGKL 166
>SB_21424| Best HMM Match : HSP20 (HMM E-Value=0)
Length = 424
Score = 57.6 bits (133), Expect = 7e-09
Identities = 28/79 (35%), Positives = 49/79 (62%), Gaps = 1/79 (1%)
Frame = +1
Query: 268 SNKDKFQV-NLDVQHFSPEEISVKTADGYVIVEGKHEERQDEHGYISRQFTRRYALPENC 444
+N++K ++ LDV+ + PEEIS K +G+V V+G+H + G+ ++F R + LPE
Sbjct: 2 ANENKLEIAKLDVREYRPEEISFKVENGFVKVQGRH-VNEGPFGFELKEFRRTFTLPEGV 60
Query: 445 NPDTVESRLSSDGVLTVIA 501
V++R+S+ G L + A
Sbjct: 61 EASNVKTRISNHGQLHIEA 79
Score = 54.8 bits (126), Expect = 5e-08
Identities = 27/76 (35%), Positives = 46/76 (60%), Gaps = 1/76 (1%)
Frame = +1
Query: 277 DKFQV-NLDVQHFSPEEISVKTADGYVIVEGKHEERQDEHGYISRQFTRRYALPENCNPD 453
D+ ++ LDV+ + PEEIS K +G+V V+G+H + G+ ++F R + LPE
Sbjct: 239 DELEIAKLDVREYRPEEISFKVENGFVKVQGRH-VNEGPFGFELKEFRRTFTLPEGVEAS 297
Query: 454 TVESRLSSDGVLTVIA 501
V++R+S+ G L + A
Sbjct: 298 NVKTRISNHGQLHIEA 313
Score = 53.2 bits (122), Expect = 2e-07
Identities = 26/86 (30%), Positives = 43/86 (50%)
Frame = +1
Query: 232 AMANRDVGSTITSNKDKFQVNLDVQHFSPEEISVKTADGYVIVEGKHEERQDEHGYISRQ 411
A+ D G + DKF + +DV F P+ I V+ ++V HE + H Y +
Sbjct: 82 ALPGPDGGEEESKGDDKFSMAMDVTGFPPDSIKVQVLGNELLVSANHEVEHEGH-YHAMH 140
Query: 412 FTRRYALPENCNPDTVESRLSSDGVL 489
F R++ LP + D++ +RL +G L
Sbjct: 141 FNRQFVLPREVDMDSLTTRLDKEGKL 166
Score = 53.2 bits (122), Expect = 2e-07
Identities = 26/86 (30%), Positives = 43/86 (50%)
Frame = +1
Query: 232 AMANRDVGSTITSNKDKFQVNLDVQHFSPEEISVKTADGYVIVEGKHEERQDEHGYISRQ 411
A+ D G + DKF + +DV F P+ I V+ ++V HE + H Y +
Sbjct: 316 ALPGPDGGEEESKGDDKFSMAMDVTGFPPDSIKVQVLGNELLVSANHEVEHEGH-YHAMH 374
Query: 412 FTRRYALPENCNPDTVESRLSSDGVL 489
F R++ LP + D++ +RL +G L
Sbjct: 375 FNRQFVLPREVDMDSLTTRLDKEGKL 400
>SB_3291| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 760
Score = 57.6 bits (133), Expect = 7e-09
Identities = 28/79 (35%), Positives = 49/79 (62%), Gaps = 1/79 (1%)
Frame = +1
Query: 268 SNKDKFQV-NLDVQHFSPEEISVKTADGYVIVEGKHEERQDEHGYISRQFTRRYALPENC 444
+N++K ++ LDV+ + PEEIS K +G+V V+G+H + G+ ++F R + LPE
Sbjct: 2 ANENKLEIAKLDVREYRPEEISFKVENGFVKVQGRH-VNEGPFGFELKEFRRTFTLPEGV 60
Query: 445 NPDTVESRLSSDGVLTVIA 501
V++R+S+ G L + A
Sbjct: 61 EASNVKTRISNHGQLHIEA 79
Score = 53.2 bits (122), Expect = 2e-07
Identities = 26/86 (30%), Positives = 43/86 (50%)
Frame = +1
Query: 232 AMANRDVGSTITSNKDKFQVNLDVQHFSPEEISVKTADGYVIVEGKHEERQDEHGYISRQ 411
A+ D G + DKF + +DV F P+ I V+ ++V HE + H Y +
Sbjct: 82 ALPGPDGGEEESKGDDKFSMAMDVTGFPPDSIKVQVLGNELLVSANHEVEHEGH-YHAMH 140
Query: 412 FTRRYALPENCNPDTVESRLSSDGVL 489
F R++ LP + D++ +RL +G L
Sbjct: 141 FNRQFVLPREVDMDSLTTRLDKEGKL 166
>SB_58906| Best HMM Match : HSP20 (HMM E-Value=3e-26)
Length = 695
Score = 56.4 bits (130), Expect = 2e-08
Identities = 28/81 (34%), Positives = 49/81 (60%), Gaps = 1/81 (1%)
Frame = +1
Query: 262 ITSNKDKFQV-NLDVQHFSPEEISVKTADGYVIVEGKHEERQDEHGYISRQFTRRYALPE 438
+ +N++K ++ LDV+ + PEEIS K +G V V+G+H + G+ ++F R + LPE
Sbjct: 1 MANNENKLEIAKLDVREYRPEEISFKVENGVVKVQGRH-VNEGPFGFELKEFRRTFTLPE 59
Query: 439 NCNPDTVESRLSSDGVLTVIA 501
V++R+S+ G L + A
Sbjct: 60 GVEASNVKTRISNHGQLHIEA 80
Score = 53.2 bits (122), Expect = 2e-07
Identities = 26/79 (32%), Positives = 42/79 (53%)
Frame = +1
Query: 253 GSTITSNKDKFQVNLDVQHFSPEEISVKTADGYVIVEGKHEERQDEHGYISRQFTRRYAL 432
G+ S DKF + +DV+ F PE I V+ ++V HE + H Y + F R++ L
Sbjct: 89 GAKKESKDDKFSMAMDVKGFPPEAIKVQVLGNELLVSANHEVEHEGH-YHAMHFNRQFIL 147
Query: 433 PENCNPDTVESRLSSDGVL 489
P + D++ +RL +G L
Sbjct: 148 PREVDMDSLTTRLDKEGKL 166
>SB_58907| Best HMM Match : HSP20 (HMM E-Value=4.2e-05)
Length = 259
Score = 47.2 bits (107), Expect = 1e-05
Identities = 26/73 (35%), Positives = 39/73 (53%), Gaps = 1/73 (1%)
Frame = +1
Query: 223 KQMAMANRDVGSTITSNKDKFQVNLDVQHFSPEEISVKTADGYVIVEGKHEERQDEHGYI 402
K+ A ++ S T + KF + LDV F PEE+ VK + V + E +EHG+
Sbjct: 8 KKAPPATKENQSAATKDDTKFTLALDVSDFKPEEVDVKVYGHELSVRARQE--CEEHGFF 65
Query: 403 -SRQFTRRYALPE 438
+RQF R + LP+
Sbjct: 66 TARQFNRHFVLPQ 78
>SB_24406| Best HMM Match : DUF536 (HMM E-Value=1.5)
Length = 436
Score = 32.7 bits (71), Expect = 0.24
Identities = 12/22 (54%), Positives = 17/22 (77%)
Frame = +1
Query: 367 KHEERQDEHGYISRQFTRRYAL 432
KHEER+D HGY+ + T ++AL
Sbjct: 72 KHEEREDRHGYLKDKVTLQHAL 93
>SB_6144| Best HMM Match : SCP (HMM E-Value=4.6e-38)
Length = 468
Score = 31.9 bits (69), Expect = 0.42
Identities = 16/41 (39%), Positives = 21/41 (51%)
Frame = +1
Query: 442 CNPDTVESRLSSDGVLTVIAPRTPAATKNERAVPITQTGPV 564
CNPD+ ++ ++S AP TP AT V T T PV
Sbjct: 77 CNPDSGQTTVTSTAATPETAPPTPPATGAPPEVTTTPTPPV 117
>SB_39858| Best HMM Match : Spectrin (HMM E-Value=2.6e-05)
Length = 3397
Score = 30.3 bits (65), Expect = 1.3
Identities = 28/87 (32%), Positives = 37/87 (42%), Gaps = 4/87 (4%)
Frame = +1
Query: 361 EGKHEERQDEHGYISRQFTRRYALPENCNPDTVESRLSSDGVLTVIAP--RTPAATKNER 534
E K+EE DEHG I R+ T+ TV ++ DGV T A +P ++
Sbjct: 1187 ETKYEEYVDEHGQIIRRTTKVKHTAVKQERTTVTKTVTRDGVTTREANVIESPPEVESST 1246
Query: 535 AVPITQTGPVR--KEIKEPTAEVESXE 609
V + VR K IK ES E
Sbjct: 1247 QVYRDEESSVRDIKPIKTKEDVFESAE 1273
>SB_57433| Best HMM Match : RRM_1 (HMM E-Value=4.5e-24)
Length = 407
Score = 29.1 bits (62), Expect = 3.0
Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Frame = +1
Query: 451 DTVESRLSSDGVLTVIAPRTPAATKNERAVPITQT-GPVRKEIKEPTAE 594
D V ++L+ V TV+ P TP T + PI T PVR E+++ A+
Sbjct: 329 DGVITKLTDASVYTVVIPTTPRTTTAVTS-PIPSTKSPVRIEVRKQKAK 376
>SB_13144| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 266
Score = 29.1 bits (62), Expect = 3.0
Identities = 10/36 (27%), Positives = 19/36 (52%)
Frame = +1
Query: 331 VKTADGYVIVEGKHEERQDEHGYISRQFTRRYALPE 438
+++A GYV+ G H + + G + + R LP+
Sbjct: 10 IRSARGYVVTSGSHTSKSEVRGIMEETCSNRNPLPQ 45
>SB_40383| Best HMM Match : IQ (HMM E-Value=0.00047)
Length = 841
Score = 28.7 bits (61), Expect = 3.9
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = -1
Query: 562 PDRFE*WEQLARSSWQPESWERSRS 488
PD+ E W +L R W P S ER+++
Sbjct: 792 PDQEEVWRRLPRFHWAPRSHERAQT 816
>SB_9039| Best HMM Match : M (HMM E-Value=0.00046)
Length = 716
Score = 28.7 bits (61), Expect = 3.9
Identities = 27/110 (24%), Positives = 45/110 (40%), Gaps = 4/110 (3%)
Frame = +1
Query: 154 LTPDDLLTAVITPTM---SRDYYRPWKQMAMANRDVG-STITSNKDKFQVNLDVQHFSPE 321
+T D L V TP M S D M M + DV ST D V + H + +
Sbjct: 225 MTMDSLDVEVSTPHMTMDSLDVEVNTPHMTMDSLDVEVSTPHMTMDSLDVEDNTPHMTMD 284
Query: 322 EISVKTADGYVIVEGKHEERQDEHGYISRQFTRRYALPENCNPDTVESRL 471
+ V+ ++ ++ E Q+E ++ +YA N + E++L
Sbjct: 285 SLDVEVNTPHMTMDSLDAEMQEEFLQKRQEMEAKYAEQFNAAKEEFEAKL 334
>SB_5773| Best HMM Match : HA2 (HMM E-Value=3e-16)
Length = 2352
Score = 27.9 bits (59), Expect = 6.9
Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 6/50 (12%)
Frame = +2
Query: 86 CHCCHSSWDTNLTA--FAIRTS--GWRLLLTIS*R--PSSRQRCPEITTG 217
C CCH S+ ++ +A+ + G L+ R PS+R+RCP+ TG
Sbjct: 2062 CTCCHKSYHVGISCGDYALSKTEIGQEHLVEKWMREDPSNRKRCPKCRTG 2111
>SB_58334| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 511
Score = 27.5 bits (58), Expect = 9.1
Identities = 12/59 (20%), Positives = 29/59 (49%)
Frame = +1
Query: 175 TAVITPTMSRDYYRPWKQMAMANRDVGSTITSNKDKFQVNLDVQHFSPEEISVKTADGY 351
T + + + +P ++M + +V + + +KDK+Q+ + +Q E++ T Y
Sbjct: 140 TLTVYKSQEEAFGQPVQRMNLRGCEVTTDVNVSKDKYQIRMRLQDNEEIELACSTESQY 198
>SB_41429| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 732
Score = 27.5 bits (58), Expect = 9.1
Identities = 18/50 (36%), Positives = 26/50 (52%)
Frame = +1
Query: 460 ESRLSSDGVLTVIAPRTPAATKNERAVPITQTGPVRKEIKEPTAEVESXE 609
+S SS+ AP+ PAA +N +A PV+K K ++E ES E
Sbjct: 48 DSSSSSESDSEEEAPKKPAAKQNGKAKKQNGKAPVKKAAKS-SSESESDE 96
>SB_7933| Best HMM Match : GCC2_GCC3 (HMM E-Value=1.4e-18)
Length = 1023
Score = 27.5 bits (58), Expect = 9.1
Identities = 13/43 (30%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Frame = +1
Query: 97 PFILGYQPNRLRDQDFGLALTPDDLLTAVI-TPTMSRDYYRPW 222
PF +G+ N++ + F PD L +I TP M ++P+
Sbjct: 34 PFKIGWYNNQVTHKQFQFPFDPDTLAFVIISTPEMFEKGFKPF 76
>SB_26957| Best HMM Match : PDZ (HMM E-Value=0)
Length = 1685
Score = 27.5 bits (58), Expect = 9.1
Identities = 19/81 (23%), Positives = 31/81 (38%)
Frame = +1
Query: 301 VQHFSPEEISVKTADGYVIVEGKHEERQDEHGYISRQFTRRYALPENCNPDTVESRLSSD 480
+ H+ + T + G+ E + Y+SR TR+ A P + PD S + +
Sbjct: 1565 MSHYQASTVLKNTGTSVELALGRSREAAE---YLSR--TRQQASPHSTEPDIKPSNIQTT 1619
Query: 481 GVLTVIAPRTPAATKNERAVP 543
I+PR R P
Sbjct: 1620 ESTPSISPRGVEVAAGPRRTP 1640
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,051,100
Number of Sequences: 59808
Number of extensions: 363516
Number of successful extensions: 1331
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 1150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1301
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1499981500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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