Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP01_F_L13
         (655 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_53603| Best HMM Match : No HMM Matches (HMM E-Value=.)              54   8e-08
SB_687| Best HMM Match : No HMM Matches (HMM E-Value=.)                28   7.6  

>SB_53603| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 456

 Score = 54.4 bits (125), Expect = 8e-08
 Identities = 35/120 (29%), Positives = 58/120 (48%), Gaps = 2/120 (1%)
 Frame = +2

Query: 302 KMRIESKQGNMQPRVALGYGACHDLFVNATLLLDHRELIGVPEHF--DEITTKEEFLKSF 475
           + R   +QG  +PR+A+G+ A  DL +NA  LL    +      +  D I  +    ++F
Sbjct: 44  RSRARLQQGP-RPRIAIGFEATVDLSLNALELLKAIGIAPPARMYPHDAIENETALAETF 102

Query: 476 TYFFKHGAAAERFMSNSKLYDDYIKRALXIPGTKWNIGGNAPLMAXRFYMEGWKVLFAAK 655
            YF+ H  A+ R+++N +L+      A  +  T+  IGG A   A RF  E    + A +
Sbjct: 103 AYFYAHSVASSRYVANKELFRKLSNLARKLESTRAIIGGTAVAFAIRFAKEQCDTVVAGR 162


>SB_687| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 579

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
 Frame = +2

Query: 314 ESKQGNMQPRVA-LGYGAC-HDLFVNATLLLDHRELIGVPEHFDEIT 448
           ++K+G     +A + + AC H   + A LLLDH  LI  P  FD  T
Sbjct: 254 KNKRGETLLHIAVIKHEACNHGHVIIAELLLDHGALIDTPGGFDHDT 300


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,593,492
Number of Sequences: 59808
Number of extensions: 384350
Number of successful extensions: 808
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 746
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 806
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1669334250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)