Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP01_F_L13
         (655 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    24   1.1  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    24   1.1  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          22   4.5  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    22   4.5  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    22   6.0  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              22   6.0  
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    21   7.9  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
 Frame = +1

Query: 184  PVKLGTI-LSFILVFYAIYYRKTDIGDVRLSPVKEHLLSLENENRVKTGXYAT 339
            P+ + T+ L   +V  A+ +R   +GD    P+KE   + +N    +   YAT
Sbjct: 1616 PLIVATVALVVAVVIVALRWRSRYLGDRMQRPMKESQENQQNAETQRERYYAT 1668


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
 Frame = +1

Query: 184  PVKLGTI-LSFILVFYAIYYRKTDIGDVRLSPVKEHLLSLENENRVKTGXYAT 339
            P+ + T+ L   +V  A+ +R   +GD    P+KE   + +N    +   YAT
Sbjct: 1612 PLIVATVALVVAVVIVALRWRSRYLGDRMQRPMKESQENQQNAETQRERYYAT 1664


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +1

Query: 52  NNSQIIVNNELTCALGSSKNTNNS 123
           NNS I   N  T A  ++ N NN+
Sbjct: 224 NNSTITAGNANTNASNNNNNNNNN 247


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = -1

Query: 616 SXCHERCITTNIPFRSWNV*G 554
           S CH R +TT   FR  N+ G
Sbjct: 709 SKCHNRNVTTCNMFRKTNLSG 729


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +1

Query: 541 LHQESLXHSRNEMEYWW 591
           L  ESL H+ +EM + W
Sbjct: 179 LQMESLSHTTDEMIFQW 195


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 10/38 (26%), Positives = 19/38 (50%)
 Frame = +1

Query: 196 GTILSFILVFYAIYYRKTDIGDVRLSPVKEHLLSLENE 309
           G +L   L    + Y+   +G   +SP   HL++L+ +
Sbjct: 724 GQLLLDYLTDTVLAYKPKILGKPTISPDSRHLVTLDKQ 761


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 9/30 (30%), Positives = 16/30 (53%)
 Frame = -1

Query: 517 HEPLGCSAMLEEICKTFEKLLFSCDFVEML 428
           H+   CS M+E +  T + L+F  +  + L
Sbjct: 141 HDTQICSMMIESLSHTTQDLVFIWNMTDPL 170


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 180,969
Number of Sequences: 438
Number of extensions: 3678
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19804986
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)