Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP01_F_L11
         (633 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC18G6.14c |rps7||40S ribosomal protein S7|Schizosaccharomyces...   122   3e-29
SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog 1|Schizosa...    30   0.24 
SPCC1020.09 |||WD repeat protein, human WDR79 family|Schizosacch...    27   2.3  
SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|...    27   3.0  
SPAC767.01c |vps1|SPAC9G1.14c|dynamin family protein Vps1|Schizo...    27   3.0  
SPCC1223.14 ||SPCC297.01|chorismate synthase |Schizosaccharomyce...    26   5.2  
SPBC14F5.13c |||alkaline phosphatase |Schizosaccharomyces pombe|...    25   9.1  

>SPAC18G6.14c |rps7||40S ribosomal protein S7|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 195

 Score =  122 bits (295), Expect = 3e-29
 Identities = 61/119 (51%), Positives = 86/119 (72%), Gaps = 2/119 (1%)
 Frame = +2

Query: 32  KIIKASGAEADSFETSISQALVELETNS-DLKAQLRELYITKAKEIELHN-KKSIIIYVP 205
           KI+K S ++    +  ++Q L +LE++S D+  +LR L IT A+E+E+   KK+I+++VP
Sbjct: 6   KIVKRSSSQPTETDLLVAQCLYDLESSSKDMAKELRPLQITSAREVEVGGGKKAIVVFVP 65

Query: 206 MPKLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTS 382
            P LKAF K Q RL RELEKKF+ +HV+F+  R+ILPKP  K+RV   QKRPRSRTLT+
Sbjct: 66  QPLLKAFHKCQARLTRELEKKFADRHVIFIAQRRILPKPGRKSRVT--QKRPRSRTLTA 122



 Score = 85.4 bits (202), Expect = 6e-18
 Identities = 38/66 (57%), Positives = 49/66 (74%)
 Frame = +3

Query: 384 VYDAILEDLVFPAEIVGKRIRVKLDGSQLIKVHLDKNQQTTIEHKVDTFQSVYKKLTGRE 563
           V++AILED+VFP EI+GKR R   DG + IKV LD     T+++K+ +F SVY KLTG+ 
Sbjct: 123 VHNAILEDIVFPTEIIGKRTRQATDGRKTIKVFLDNRDANTVDYKLGSFSSVYHKLTGKN 182

Query: 564 VTFEFP 581
           VTFEFP
Sbjct: 183 VTFEFP 188


>SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 941

 Score = 30.3 bits (65), Expect = 0.24
 Identities = 20/66 (30%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
 Frame = +3

Query: 387 YDAILEDLVFPAEIVGKRIRVKLDGSQLIKVHLDKNQQTTIEHKVDTF-QSVYKKLTGRE 563
           YD + EDL   ++ +GK+  ++   ++L  VHL  +   TIE  +  F Q+V  + T   
Sbjct: 571 YDKLQEDL---SKRLGKKATLRKSPAKLYYVHLKLSGNETIERFIKKFTQAVLFQSTKST 627

Query: 564 VTFEFP 581
            +F+ P
Sbjct: 628 ASFQLP 633


>SPCC1020.09 |||WD repeat protein, human WDR79
           family|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 399

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 16/27 (59%), Positives = 17/27 (62%)
 Frame = -1

Query: 324 LGLGRILRSPTKTTCLPLNFFSSSRTS 244
           LG   I +SPTK    PLNFF SSR S
Sbjct: 33  LGTNVIAQSPTK----PLNFFHSSRWS 55


>SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1184

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 9/24 (37%), Positives = 18/24 (75%)
 Frame = +3

Query: 297  ETVRSCLSPATKPVLLTNKRGHAQ 368
            E+ +  ++ +TKPV +T+K GH++
Sbjct: 1069 ESTKPAVNNSTKPVAVTSKNGHSR 1092


>SPAC767.01c |vps1|SPAC9G1.14c|dynamin family protein
           Vps1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 678

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 13/31 (41%), Positives = 22/31 (70%)
 Frame = +2

Query: 194 IYVPMPKLKAFQKIQIRLVRELEKKFSGKHV 286
           +++P  K   F+KI+  +VRE E+K +GK+V
Sbjct: 101 LHLPGQKFFEFEKIREEIVRETEEK-TGKNV 130


>SPCC1223.14 ||SPCC297.01|chorismate synthase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 395

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +2

Query: 371 TLTSGVRCYPRGLGLPC*DRRQA 439
           T+T  +R  P GLG PC D+ +A
Sbjct: 234 TVTCVIRNVPTGLGEPCFDKLEA 256


>SPBC14F5.13c |||alkaline phosphatase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 532

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -3

Query: 502 VCWFLSKCTLMSCEPSNLTLMR 437
           +C FL K T  SC   NL L++
Sbjct: 207 LCSFLPKSTYRSCRSDNLDLLK 228


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,479,430
Number of Sequences: 5004
Number of extensions: 50264
Number of successful extensions: 156
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 281707720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)