Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP01_F_L11
(633 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g02560.2 68416.m00247 40S ribosomal protein S7 (RPS7B) simila... 111 3e-25
At3g02560.1 68416.m00246 40S ribosomal protein S7 (RPS7B) simila... 111 3e-25
At5g16130.1 68418.m01884 40S ribosomal protein S7 (RPS7C) 40S ri... 106 1e-23
At1g48830.2 68414.m05465 40S ribosomal protein S7 (RPS7A) simila... 100 7e-22
At1g48830.1 68414.m05464 40S ribosomal protein S7 (RPS7A) simila... 100 7e-22
At5g40640.1 68418.m04933 expressed protein 29 2.6
At4g08113.1 68417.m01331 myosin heavy chain-related similar to M... 28 4.5
At1g52960.1 68414.m05990 hypothetical protein very low similarit... 28 5.9
At5g35970.1 68418.m04332 DNA-binding protein, putative similar t... 27 7.8
At1g64590.1 68414.m07321 short-chain dehydrogenase/reductase (SD... 27 7.8
>At3g02560.2 68416.m00247 40S ribosomal protein S7 (RPS7B) similar
to ribosomal protein S7 GB:AAD26256 from [Secale
cereale]
Length = 191
Score = 111 bits (268), Expect = 3e-25
Identities = 59/119 (49%), Positives = 84/119 (70%), Gaps = 2/119 (1%)
Frame = +2
Query: 32 KIIKASGAEADSFETSISQALVELE-TNSDLKAQLRELYITKAKEIELH-NKKSIIIYVP 205
KI K G FE ++QAL +LE TN +LK++L++LYI +A ++++ N+K+++IYVP
Sbjct: 7 KIHKDKGVAPTEFEEQVTQALFDLENTNQELKSELKDLYINQAVQMDISGNRKAVVIYVP 66
Query: 206 MPKLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTS 382
KAF+KI +RLVRELEKKFSGK V+FV R+I+ P + V +RPR+RTLTS
Sbjct: 67 FRLRKAFRKIHLRLVRELEKKFSGKDVIFVATRRIMRPPKKGSAV----QRPRNRTLTS 121
Score = 81.8 bits (193), Expect = 3e-16
Identities = 34/66 (51%), Positives = 52/66 (78%)
Frame = +3
Query: 384 VYDAILEDLVFPAEIVGKRIRVKLDGSQLIKVHLDKNQQTTIEHKVDTFQSVYKKLTGRE 563
V++A+LED+ +PAEIVGKR R +LDG++++KV LD + E+K++T VY+KLTG++
Sbjct: 122 VHEAMLEDVAYPAEIVGKRTRYRLDGTKIMKVFLDSKLKNDTEYKLETMVGVYRKLTGKD 181
Query: 564 VTFEFP 581
V FE+P
Sbjct: 182 VVFEYP 187
>At3g02560.1 68416.m00246 40S ribosomal protein S7 (RPS7B) similar
to ribosomal protein S7 GB:AAD26256 from [Secale
cereale]
Length = 191
Score = 111 bits (268), Expect = 3e-25
Identities = 59/119 (49%), Positives = 84/119 (70%), Gaps = 2/119 (1%)
Frame = +2
Query: 32 KIIKASGAEADSFETSISQALVELE-TNSDLKAQLRELYITKAKEIELH-NKKSIIIYVP 205
KI K G FE ++QAL +LE TN +LK++L++LYI +A ++++ N+K+++IYVP
Sbjct: 7 KIHKDKGVAPTEFEEQVTQALFDLENTNQELKSELKDLYINQAVQMDISGNRKAVVIYVP 66
Query: 206 MPKLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTS 382
KAF+KI +RLVRELEKKFSGK V+FV R+I+ P + V +RPR+RTLTS
Sbjct: 67 FRLRKAFRKIHLRLVRELEKKFSGKDVIFVATRRIMRPPKKGSAV----QRPRNRTLTS 121
Score = 81.8 bits (193), Expect = 3e-16
Identities = 34/66 (51%), Positives = 52/66 (78%)
Frame = +3
Query: 384 VYDAILEDLVFPAEIVGKRIRVKLDGSQLIKVHLDKNQQTTIEHKVDTFQSVYKKLTGRE 563
V++A+LED+ +PAEIVGKR R +LDG++++KV LD + E+K++T VY+KLTG++
Sbjct: 122 VHEAMLEDVAYPAEIVGKRTRYRLDGTKIMKVFLDSKLKNDTEYKLETMVGVYRKLTGKD 181
Query: 564 VTFEFP 581
V FE+P
Sbjct: 182 VVFEYP 187
>At5g16130.1 68418.m01884 40S ribosomal protein S7 (RPS7C) 40S
ribosomal protein S7 homolog - Brassica oleracea,
EMBL:AF144752
Length = 190
Score = 106 bits (254), Expect = 1e-23
Identities = 59/119 (49%), Positives = 81/119 (68%), Gaps = 2/119 (1%)
Frame = +2
Query: 32 KIIKASGAEADSFETSISQALVELE-TNSDLKAQLRELYITKAKEIELH-NKKSIIIYVP 205
KI K AE E ++QAL +LE TN +LK++L++LYI +A +++ N+K+++IYVP
Sbjct: 7 KIKKDKNAEPTECEEQVAQALFDLENTNQELKSELKDLYINQAVHMDISGNRKAVVIYVP 66
Query: 206 MPKLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTS 382
KAF+KI RLVRELEKKFSGK V+FV R+I+ P V +RPR+RTLTS
Sbjct: 67 FRLRKAFRKIHPRLVRELEKKFSGKDVIFVTTRRIMRPPKKGAAV----QRPRNRTLTS 121
Score = 85.8 bits (203), Expect = 2e-17
Identities = 36/66 (54%), Positives = 53/66 (80%)
Frame = +3
Query: 384 VYDAILEDLVFPAEIVGKRIRVKLDGSQLIKVHLDKNQQTTIEHKVDTFQSVYKKLTGRE 563
V++A+LED+ FPAEIVGKR R +LDGS+++KV LD ++ E+K++T VY+KLTG++
Sbjct: 122 VHEAMLEDVAFPAEIVGKRTRYRLDGSKIMKVFLDAKEKNNTEYKLETMVGVYRKLTGKD 181
Query: 564 VTFEFP 581
V FE+P
Sbjct: 182 VVFEYP 187
>At1g48830.2 68414.m05465 40S ribosomal protein S7 (RPS7A) similar
to 40S ribosomal protein S7 homolog GI:5532505 from
[Brassica oleracea]
Length = 191
Score = 100 bits (240), Expect = 7e-22
Identities = 53/119 (44%), Positives = 80/119 (67%), Gaps = 2/119 (1%)
Frame = +2
Query: 32 KIIKASGAEADSFETSISQALVELE-TNSDLKAQLRELYITKAKEIELHN-KKSIIIYVP 205
KI K G E + ++QA +LE TN +LK++L++LY+ A ++++ +K+I++ VP
Sbjct: 7 KIHKEKGVELSELDEQVAQAFFDLENTNQELKSELKDLYVNSAVQVDISGGRKAIVVNVP 66
Query: 206 MPKLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTS 382
KA++KI +RLVRELEKKFSGK V+ + R+I+ +P K A KRPR+RTLTS
Sbjct: 67 YRLRKAYRKIHVRLVRELEKKFSGKDVILIATRRIV-RPPKKGSAA---KRPRNRTLTS 121
Score = 89.0 bits (211), Expect = 2e-18
Identities = 38/66 (57%), Positives = 54/66 (81%)
Frame = +3
Query: 384 VYDAILEDLVFPAEIVGKRIRVKLDGSQLIKVHLDKNQQTTIEHKVDTFQSVYKKLTGRE 563
V++AIL+D+V PAEIVGKR R +LDG++++KV LD ++ E+KV+ F +VYKKLTG++
Sbjct: 122 VHEAILDDVVLPAEIVGKRTRYRLDGTKIMKVFLDPKERNNTEYKVEAFSAVYKKLTGKD 181
Query: 564 VTFEFP 581
V FEFP
Sbjct: 182 VVFEFP 187
>At1g48830.1 68414.m05464 40S ribosomal protein S7 (RPS7A) similar
to 40S ribosomal protein S7 homolog GI:5532505 from
[Brassica oleracea]
Length = 191
Score = 100 bits (240), Expect = 7e-22
Identities = 53/119 (44%), Positives = 80/119 (67%), Gaps = 2/119 (1%)
Frame = +2
Query: 32 KIIKASGAEADSFETSISQALVELE-TNSDLKAQLRELYITKAKEIELHN-KKSIIIYVP 205
KI K G E + ++QA +LE TN +LK++L++LY+ A ++++ +K+I++ VP
Sbjct: 7 KIHKEKGVELSELDEQVAQAFFDLENTNQELKSELKDLYVNSAVQVDISGGRKAIVVNVP 66
Query: 206 MPKLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTS 382
KA++KI +RLVRELEKKFSGK V+ + R+I+ +P K A KRPR+RTLTS
Sbjct: 67 YRLRKAYRKIHVRLVRELEKKFSGKDVILIATRRIV-RPPKKGSAA---KRPRNRTLTS 121
Score = 89.0 bits (211), Expect = 2e-18
Identities = 38/66 (57%), Positives = 54/66 (81%)
Frame = +3
Query: 384 VYDAILEDLVFPAEIVGKRIRVKLDGSQLIKVHLDKNQQTTIEHKVDTFQSVYKKLTGRE 563
V++AIL+D+V PAEIVGKR R +LDG++++KV LD ++ E+KV+ F +VYKKLTG++
Sbjct: 122 VHEAILDDVVLPAEIVGKRTRYRLDGTKIMKVFLDPKERNNTEYKVEAFSAVYKKLTGKD 181
Query: 564 VTFEFP 581
V FEFP
Sbjct: 182 VVFEFP 187
>At5g40640.1 68418.m04933 expressed protein
Length = 586
Score = 29.1 bits (62), Expect = 2.6
Identities = 14/54 (25%), Positives = 26/54 (48%)
Frame = +2
Query: 224 FQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSG 385
F++ + LV++L KH F G + +P+P QK + +T ++G
Sbjct: 517 FRRHFVELVKKLSNDLDNKHNRFEGGSRSVPRPGKTVSRIFSQKSFKKKTSSNG 570
>At4g08113.1 68417.m01331 myosin heavy chain-related similar to
Myosin heavy chain, skeletal muscle, extraocular
(MyHC-eo) (SP:Q9UKX3) {Homo sapiens}
Length = 764
Score = 28.3 bits (60), Expect = 4.5
Identities = 23/93 (24%), Positives = 38/93 (40%), Gaps = 3/93 (3%)
Frame = +2
Query: 8 RKVVKMSTKIIKASGAEADSFETSISQALVELETNSDLKAQLRELYITKAKEI---ELHN 178
+ +++ T +KA SF+ I + +EL T+ DL+ E EI EL
Sbjct: 547 KALIRELTSSVKAGQDRKVSFQAEIERLKMELSTSKDLEKGFAEKIGFMEMEIRGEELSK 606
Query: 179 KKSIIIYVPMPKLKAFQKIQIRLVRELEKKFSG 277
K + V + KA ++ L K +G
Sbjct: 607 KVVDLTSVAQGEKKAVHDAKVELAAAYSKLLAG 639
>At1g52960.1 68414.m05990 hypothetical protein very low similarity
to SP|Q9UUA2 DNA repair and recombination protein pif1,
mitochondrial precursor {Schizosaccharomyces pombe}
Length = 996
Score = 27.9 bits (59), Expect = 5.9
Identities = 20/58 (34%), Positives = 33/58 (56%), Gaps = 8/58 (13%)
Frame = +2
Query: 167 ELHNKKSIIIY--VPMPKLKAFQKIQIRLVREL-----EKKFSGKHVVFVGD-RKILP 316
EL + ++II+ PM F+ + R +R++ +K F GK +VF GD R++LP
Sbjct: 640 ELVKEANLIIWDETPMMSKHCFESLD-RTLRDIMNNPGDKPFGGKGIVFGGDFRQVLP 696
>At5g35970.1 68418.m04332 DNA-binding protein, putative similar to
SWISS-PROT:Q60560 DNA-binding protein SMUBP-2
(Immunoglobulin MU binding protein 2, SMUBP-2)
[Mesocricetus auratus]
Length = 961
Score = 27.5 bits (58), Expect = 7.8
Identities = 16/63 (25%), Positives = 33/63 (52%)
Frame = +2
Query: 2 PSRKVVKMSTKIIKASGAEADSFETSISQALVELETNSDLKAQLRELYITKAKEIELHNK 181
P + V+ M ++ +KA D F + +SQ L+++E +++L+ EL + + +
Sbjct: 245 PVQGVLGMDSEKVKAIQERIDEFTSQMSQ-LLQVERDTELEVTQEELDVVPTPDESSDSS 303
Query: 182 KSI 190
K I
Sbjct: 304 KPI 306
>At1g64590.1 68414.m07321 short-chain dehydrogenase/reductase (SDR)
family protein contains INTERPRO family IPR002198
short-chain dehydrogenase/reductase (SDR) superfamily
Length = 334
Score = 27.5 bits (58), Expect = 7.8
Identities = 13/40 (32%), Positives = 23/40 (57%)
Frame = +3
Query: 420 AEIVGKRIRVKLDGSQLIKVHLDKNQQTTIEHKVDTFQSV 539
AE RI + +++I +HLD + T++ VD F+S+
Sbjct: 71 AEETKARILSEFPDAEIIVMHLDLSSLTSVRRFVDDFESL 110
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,077,457
Number of Sequences: 28952
Number of extensions: 272415
Number of successful extensions: 785
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 767
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 779
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1295224128
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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