Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP01_F_L06
         (653 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC664.05 |rpl13||60S ribosomal protein L13|Schizosaccharomyces...   111   6e-26
SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces pomb...    28   1.0  
SPAC23C4.02 |crn1||actin binding protein, coronin Crn1|Schizosac...    26   4.1  
SPAC869.07c |mel1||alpha-galactosidase |Schizosaccharomyces pomb...    25   7.2  
SPCC1322.14c |vtc4||vacuolar transporter chaperone |Schizosaccha...    25   9.5  

>SPAC664.05 |rpl13||60S ribosomal protein L13|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 208

 Score =  111 bits (268), Expect = 6e-26
 Identities = 52/93 (55%), Positives = 64/93 (68%)
 Frame = +3

Query: 69  IPNGHFHKDWQRFVKTWFNQPARRYRRKQNRIXXXXXXXXXXXXXXLRPIVRCPTVRYHT 248
           +PN HFHKDWQR+VKTWFNQP R+ RR+Q R               +RP V+ PT+RY+ 
Sbjct: 9   LPNAHFHKDWQRYVKTWFNQPGRKLRRRQAR-QTKAAKIAPRPVEAIRPAVKPPTIRYNM 67

Query: 249 KVRAGRGFTLREIRAAGLNPVFARTIGIAVDPR 347
           KVRAGRGFTL E++AAG++   A TIGI VD R
Sbjct: 68  KVRAGRGFTLEELKAAGVSRRVASTIGIPVDHR 100



 Score = 67.7 bits (158), Expect = 1e-12
 Identities = 42/100 (42%), Positives = 58/100 (58%), Gaps = 1/100 (1%)
 Frame = +1

Query: 355 NKSVESLQINVQRIKEYRARLILFP-KGKKVLKGEANEEERKLATQLRGPLMPVQQPAPK 531
           N+S ESLQ NV+RIK Y A LI+FP K  +  KG+A +      T +   ++P+ Q A +
Sbjct: 103 NRSEESLQRNVERIKVYLAHLIVFPRKAGQPKKGDATDVSGAEQTDV-AAVLPITQEAVE 161

Query: 532 SVARPITEDEKNFKAYQYLRGARSIAKLVGIRAKRLKDAA 651
             A+PITE+ KNF A+  L   R+ A+  G RA   K  A
Sbjct: 162 E-AKPITEEAKNFNAFSTLSNERAYARYAGARAAFQKKRA 200


>SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1283

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 16/44 (36%), Positives = 20/44 (45%), Gaps = 4/44 (9%)
 Frame = -1

Query: 281  TKSESSTGAYFSM----VPNSWASHYRT*RPSCRTWSYGLSFLY 162
            T   +STG+Y  M    +   W S   T    C TWSY  S+ Y
Sbjct: 1215 TVQGTSTGSYICMPHFQIQYDWCSAGVTDMSECNTWSYQKSYDY 1258


>SPAC23C4.02 |crn1||actin binding protein, coronin
           Crn1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 601

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 11/38 (28%), Positives = 20/38 (52%)
 Frame = +1

Query: 448 KGEANEEERKLATQLRGPLMPVQQPAPKSVARPITEDE 561
           + E N ++ +  TQ +    PV++  PK  + P+T  E
Sbjct: 470 RDEDNHQKEETVTQPKREKTPVEKSFPKPASSPVTFSE 507


>SPAC869.07c |mel1||alpha-galactosidase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 436

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 13/42 (30%), Positives = 23/42 (54%)
 Frame = +2

Query: 269 IHSS*N*GRRIEPSICPNDWNCCRSPXDATSLLNHCKSMFKE 394
           +H S N G  ++P +  N WN      D + +LN+ K++ +E
Sbjct: 22  VHGSYN-GLGLKPQMGWNSWNKYACDIDESIILNNAKAIKEE 62


>SPCC1322.14c |vtc4||vacuolar transporter chaperone
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 721

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +1

Query: 73  LMDISTRIGKDLLKLGLTSQLDDTAES 153
           L+DIS R G+D     L S+L D  +S
Sbjct: 556 LLDISKRKGRDSFVAALNSRLKDIKDS 582


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,644,590
Number of Sequences: 5004
Number of extensions: 52712
Number of successful extensions: 143
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)