Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP01_F_L06
         (653 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19135| Best HMM Match : Ribosomal_L13e (HMM E-Value=0)             129   2e-30
SB_12085| Best HMM Match : TBP (HMM E-Value=3.5e-35)                   32   0.35 
SB_54753| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.4  
SB_47063| Best HMM Match : APOBEC_C (HMM E-Value=0.41)                 28   5.8  
SB_58892| Best HMM Match : IncA (HMM E-Value=1.3)                      28   7.6  
SB_32771| Best HMM Match : IncA (HMM E-Value=1.4)                      28   7.6  

>SB_19135| Best HMM Match : Ribosomal_L13e (HMM E-Value=0)
          Length = 600

 Score =  129 bits (312), Expect = 2e-30
 Identities = 60/98 (61%), Positives = 70/98 (71%)
 Frame = +3

Query: 54  KGNNMIPNGHFHKDWQRFVKTWFNQPARRYRRKQNRIXXXXXXXXXXXXXXLRPIVRCPT 233
           K NN+IPNGHFHKDWQR+VKTWF+QP R+ RR+  R               LRPIVRCPT
Sbjct: 4   KRNNIIPNGHFHKDWQRYVKTWFDQPGRKKRRRVARQIKAAKIAPRPVAGSLRPIVRCPT 63

Query: 234 VRYHTKVRAGRGFTLREIRAAGLNPVFARTIGIAVDPR 347
            +Y+TKVRAGRGFTL E++AAG+    A TIGIAVD R
Sbjct: 64  FKYNTKVRAGRGFTLDELKAAGIPRKVAPTIGIAVDHR 101



 Score = 79.4 bits (187), Expect = 2e-15
 Identities = 41/92 (44%), Positives = 60/92 (65%), Gaps = 2/92 (2%)
 Frame = +1

Query: 355 NKSVESLQINVQRIKEYRARLILFP-KGKKVLKGEANEEERKLATQLRGPLMPVQQPAPK 531
           N+S ESLQ NVQR+KEY+++LI+FP K  K  +G++   +   A QL+GP+MP+ Q +  
Sbjct: 104 NRSAESLQANVQRLKEYKSKLIVFPRKANKPKQGDSEAADLANAVQLQGPVMPIPQESVP 163

Query: 532 SVARPITEDEKNFKAYQYLRGARSI-AKLVGI 624
             ARPITEDEK   + +    +  +  KLVG+
Sbjct: 164 IKARPITEDEKKSASSRQCESSGEVKTKLVGL 195


>SB_12085| Best HMM Match : TBP (HMM E-Value=3.5e-35)
          Length = 440

 Score = 32.3 bits (70), Expect = 0.35
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = +1

Query: 385 VQRIKEYRARLILFPKGKKVLKGEANEEERKLATQ 489
           + RI+E R   ++F  GK V  G  +EE+ KLA +
Sbjct: 319 IMRIREPRTTALIFSSGKMVCTGAKSEEQSKLAAR 353


>SB_54753| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 462

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 18/55 (32%), Positives = 27/55 (49%)
 Frame = -1

Query: 179 GLSFLYSILLSAVSSSWLVKPSFNKSLPILVEMSIRYHIIPLAHFDVGVLPRQRK 15
           G  F  +IL+ A  SS L++P F+ SLP+  +      +  L H      P +RK
Sbjct: 195 GFDFGKAILVKASLSSDLIRPGFDVSLPLFPKTHPHKDLGNLPH-SCSAFPLERK 248


>SB_47063| Best HMM Match : APOBEC_C (HMM E-Value=0.41)
          Length = 430

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 14/44 (31%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
 Frame = -2

Query: 346 RGSTAIPIVRANTGFNPAALISRRVNPLPAR--TLVWYRTVGHR 221
           +GS     V ++T  NP  L++R  N +P R  +L+W++  G +
Sbjct: 375 KGSWVALTVESSTLANPNILLARIQNLMPGRKASLLWFKATGKK 418


>SB_58892| Best HMM Match : IncA (HMM E-Value=1.3)
          Length = 449

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 14/51 (27%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
 Frame = -2

Query: 346 RGSTAIPIVRANTGFNPAALISRRVNPLPAR--TLVWYRTVGHRTIGRNGP 200
           +GS     V  +T  NP  L++R  N +P R  +L+W++    + +  + P
Sbjct: 176 KGSWVALTVEGSTLANPNILLARIQNLMPGRKASLLWFKATAEKGLKSDNP 226


>SB_32771| Best HMM Match : IncA (HMM E-Value=1.4)
          Length = 318

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 14/51 (27%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
 Frame = -2

Query: 346 RGSTAIPIVRANTGFNPAALISRRVNPLPAR--TLVWYRTVGHRTIGRNGP 200
           +GS     V  +T  NP  L++R  N +P R  +L+W++    + +  + P
Sbjct: 66  KGSWVALTVEGSTLANPNILLARIQNLMPGRKASLLWFKATAEKGLKSDNP 116


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,432,952
Number of Sequences: 59808
Number of extensions: 380302
Number of successful extensions: 1026
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 940
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1024
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1669334250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)