Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP01_F_L05
         (654 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyce...   118   1e-27
SPAC607.03c |snu13||U3 snoRNP-associated protein Snu13|Schizosac...    33   0.036
SPAC1782.10c |nhp2||RNA-binding protein Nhp2 |Schizosaccharomyce...    29   0.77 
SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos...    26   4.1  
SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit Pa...    26   5.5  
SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces ...    25   7.2  
SPCC24B10.15 |||PINc domain|Schizosaccharomyces pombe|chr 3|||Ma...    25   7.2  
SPAC1851.03 |ckb1||CK2 family regulatory subunit |Schizosaccharo...    25   9.5  

>SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 259

 Score =  118 bits (283), Expect = 1e-27
 Identities = 52/78 (66%), Positives = 63/78 (80%)
 Frame = +2

Query: 191 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLD 370
           NPLF  RP++F IGQ IQP RDLSRFV+WP+YIR+QR++ +L  RLKVPP I QF +TLD
Sbjct: 24  NPLFVSRPRSFGIGQDIQPKRDLSRFVKWPEYIRLQRRRKILNLRLKVPPAIAQFQKTLD 83

Query: 371 KTTAKGLFKILEKYRPET 424
           K TA  +FK+L KYRPET
Sbjct: 84  KNTATQVFKLLNKYRPET 101



 Score = 51.6 bits (118), Expect = 1e-07
 Identities = 22/25 (88%), Positives = 24/25 (96%)
 Frame = +3

Query: 576 IAHDVDPIELVLFLPALCRKMGVPY 650
           IA DVDPIELV+FLPALC+KMGVPY
Sbjct: 153 IASDVDPIELVVFLPALCKKMGVPY 177


>SPAC607.03c |snu13||U3 snoRNP-associated protein
           Snu13|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 125

 Score = 33.1 bits (72), Expect = 0.036
 Identities = 13/25 (52%), Positives = 17/25 (68%)
 Frame = +3

Query: 576 IAHDVDPIELVLFLPALCRKMGVPY 650
           +A D +PIE++L LP LC    VPY
Sbjct: 53  MAADTEPIEILLHLPLLCEDKNVPY 77


>SPAC1782.10c |nhp2||RNA-binding protein Nhp2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 154

 Score = 28.7 bits (61), Expect = 0.77
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = +3

Query: 576 IAHDVDPIELVLFLPALCRKMGVPY 650
           +A D+ P++++  +P LC    VPY
Sbjct: 75  LAGDISPMDVISHIPVLCEDNNVPY 99


>SPAC20G8.05c |cdc15||cell division control protein
           Cdc15|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 927

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 14/52 (26%), Positives = 23/52 (44%)
 Frame = +1

Query: 226 YWSGHSANS*LVQICKMAQVYPHPAPEGCTSASSESAPSDQPIYPDTGQDYS 381
           Y+  +  N  + Q+   A  YP+ +     SAS  S+P+     P T +  S
Sbjct: 296 YFKENGLNYDIDQLISKAPSYPYSSSRPSASASLASSPTRSAFRPKTSETVS 347


>SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit
           Par2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 627

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +2

Query: 305 KAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILE 406
           KAVL   LK  P IN F + L     + +F++LE
Sbjct: 463 KAVLTGILKYWPRINSFKELLFLNEIEDIFEVLE 496


>SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 561

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +1

Query: 289 PHPAPEGCTSASSESAPSDQPIYPDTGQDY 378
           PHP      SA S ++P   P+ P T +DY
Sbjct: 355 PHPRVFSANSAFSTTSPP--PLTPSTSRDY 382


>SPCC24B10.15 |||PINc domain|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 462

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 16/57 (28%), Positives = 24/57 (42%)
 Frame = -3

Query: 487 LIFLGNLSFSSFPQPLFPGCFSLRPVFLQNLEKALSCSLVQCLGKLVDRRGHFQTTL 317
           L F   L  +S  Q  FP  FS     L+NL   +  ++ Q L    + R    +T+
Sbjct: 197 LSFSKGLEAASIVQTSFPSAFSSNSENLENLSMDIDLTVSQPLATATNHRNQGASTV 253


>SPAC1851.03 |ckb1||CK2 family regulatory subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 231

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 9/13 (69%), Positives = 13/13 (100%)
 Frame = +2

Query: 377 TAKGLFKILEKYR 415
           TA+GL+K+LEKY+
Sbjct: 94  TAQGLYKMLEKYK 106


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,322,441
Number of Sequences: 5004
Number of extensions: 39291
Number of successful extensions: 117
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)