Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP01_F_L05
         (654 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_16903| Best HMM Match : No HMM Matches (HMM E-Value=.)             124   6e-29
SB_55500| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=2.8e-24)        50   1e-06
SB_38307| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=1.6e-27)        32   0.35 
SB_46996| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.3  
SB_57776| Best HMM Match : EB (HMM E-Value=2.9)                        29   4.4  
SB_235| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=3.9e-15)          29   4.4  
SB_48160| Best HMM Match : Cytochrom_C (HMM E-Value=1.8e-05)           28   5.8  
SB_35585| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.6  
SB_19395| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.6  

>SB_16903| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 263

 Score =  124 bits (299), Expect = 6e-29
 Identities = 54/78 (69%), Positives = 65/78 (83%)
 Frame = +2

Query: 191 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLD 370
           NPL EKRP+NF IG  IQP RDLSRFVRWP+Y+++QRQK++L +RLKVPP INQFTQ LD
Sbjct: 29  NPLIEKRPRNFGIGGDIQPKRDLSRFVRWPRYVKLQRQKSLLYQRLKVPPAINQFTQALD 88

Query: 371 KTTAKGLFKILEKYRPET 424
           + +   LFK+L KYRPET
Sbjct: 89  RQSTVQLFKLLHKYRPET 106



 Score = 50.4 bits (115), Expect = 1e-06
 Identities = 21/25 (84%), Positives = 24/25 (96%)
 Frame = +3

Query: 576 IAHDVDPIELVLFLPALCRKMGVPY 650
           IAHDVDPIE+V++LPALCRKM VPY
Sbjct: 157 IAHDVDPIEIVVWLPALCRKMQVPY 181


>SB_55500| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=2.8e-24)
          Length = 172

 Score = 50.4 bits (115), Expect = 1e-06
 Identities = 21/25 (84%), Positives = 24/25 (96%)
 Frame = +3

Query: 576 IAHDVDPIELVLFLPALCRKMGVPY 650
           IAHDVDPIE+V++LPALCRKM VPY
Sbjct: 66  IAHDVDPIEIVVWLPALCRKMQVPY 90


>SB_38307| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=1.6e-27)
          Length = 187

 Score = 32.3 bits (70), Expect = 0.35
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = +3

Query: 576 IAHDVDPIELVLFLPALCRKMGVPY 650
           +A D +P+E++L LP LC    VPY
Sbjct: 115 MAADTEPLEILLHLPLLCEDKNVPY 139


>SB_46996| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 227

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 15/58 (25%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
 Frame = +1

Query: 184 DRESSLREEAKELCYWSGHSANS*LVQ-ICKMAQVYPHPAPEGCTSASSESAPSDQPI 354
           DR  ++ E  KE+CYW GH   + + + + +  +          T+++SE   S +P+
Sbjct: 137 DRRKNMEERHKEMCYW-GHKFETYVTKLVSERGKRETVMGASTSTASTSEGGASAKPV 193


>SB_57776| Best HMM Match : EB (HMM E-Value=2.9)
          Length = 669

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 15/58 (25%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
 Frame = +1

Query: 184 DRESSLREEAKELCYWSGHSANS*LVQ-ICKMAQVYPHPAPEGCTSASSESAPSDQPI 354
           DR  ++ E  KE+CYW GH   + + + + +  +          T++ SE   S +P+
Sbjct: 187 DRRKNMEERHKEMCYW-GHKFETYVTKLVSERGKRETVMGASTSTASKSEGGASAKPV 243


>SB_235| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=3.9e-15)
          Length = 544

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = +3

Query: 576 IAHDVDPIELVLFLPALCRKMGVPY 650
           +A DV PI+++  +P +C    +PY
Sbjct: 120 LAGDVSPIDVISHIPVMCEDSKIPY 144


>SB_48160| Best HMM Match : Cytochrom_C (HMM E-Value=1.8e-05)
          Length = 212

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -3

Query: 502 PLWWRLIFLGNLSFSSFPQPLFPG 431
           P WW ++F+G + FS     L+PG
Sbjct: 56  PKWWFMLFIGTIVFSIGYLVLYPG 79


>SB_35585| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 655

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 12/19 (63%), Positives = 14/19 (73%)
 Frame = +1

Query: 313 TSASSESAPSDQPIYPDTG 369
           T+ASSE+APS  P  PD G
Sbjct: 43  TAASSEAAPSSAPSMPDYG 61


>SB_19395| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 832

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 17/50 (34%), Positives = 23/50 (46%)
 Frame = +2

Query: 260 SRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEK 409
           SR  RW  Y R+   KA+LQR  ++   I Q T  + K        +L K
Sbjct: 508 SRTFRWDPYSRMSTLKALLQRMEQLKTQIVQETCEIKKLEKLSRLVLLRK 557


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,873,730
Number of Sequences: 59808
Number of extensions: 307320
Number of successful extensions: 763
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 727
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 763
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1669334250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)