Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP01_F_L05
(654 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC006729-4|AAK84600.1| 265|Caenorhabditis elegans Ribosomal pro... 121 4e-28
AC006729-3|AAM15612.1| 245|Caenorhabditis elegans Ribosomal pro... 121 5e-28
AC084159-4|AAK39366.1| 234|Caenorhabditis elegans Hypothetical ... 120 7e-28
AC084159-5|AAM69075.1| 199|Caenorhabditis elegans Hypothetical ... 100 1e-21
AF016444-5|AAB65932.1| 330|Caenorhabditis elegans Serpentine re... 36 0.025
Z49911-4|CAA90127.1| 128|Caenorhabditis elegans Hypothetical pr... 32 0.31
U23486-3|AAL38955.1| 529|Caenorhabditis elegans Hypothetical pr... 28 6.7
AF003386-7|AAB54258.2| 412|Caenorhabditis elegans Hypothetical ... 27 8.8
>AC006729-4|AAK84600.1| 265|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 7A, isoform a protein.
Length = 265
Score = 121 bits (292), Expect = 4e-28
Identities = 56/108 (51%), Positives = 70/108 (64%)
Frame = +2
Query: 191 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLD 370
NPLFEKR +NF IGQ IQP +D++RFV+WPKYIR+QRQ A+LQ+RLKVPP INQF LD
Sbjct: 30 NPLFEKRARNFNIGQDIQPKKDVTRFVKWPKYIRLQRQSAILQKRLKVPPTINQFRTALD 89
Query: 371 KTTAKGLFKILEKYRPETXXXXXXXXXXXXXXXXXXXXXXXXXRPNTI 514
+A+ FK+L+KYRPE+ RPNT+
Sbjct: 90 SQSARQAFKLLDKYRPESTEAKKNRLRARAEARAAGKKEEVTKRPNTV 137
Score = 46.4 bits (105), Expect = 2e-05
Identities = 19/25 (76%), Positives = 22/25 (88%)
Frame = +3
Query: 576 IAHDVDPIELVLFLPALCRKMGVPY 650
IAHDV+P+E+VL LPALCRK VPY
Sbjct: 158 IAHDVNPLEIVLHLPALCRKYNVPY 182
>AC006729-3|AAM15612.1| 245|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 7A, isoform c protein.
Length = 245
Score = 121 bits (291), Expect = 5e-28
Identities = 52/78 (66%), Positives = 65/78 (83%)
Frame = +2
Query: 191 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLD 370
NPLFEKR +NF IGQ IQP +D++RFV+WPKYIR+QRQ A+LQ+RLKVPP INQF LD
Sbjct: 30 NPLFEKRARNFNIGQDIQPKKDVTRFVKWPKYIRLQRQSAILQKRLKVPPTINQFRTALD 89
Query: 371 KTTAKGLFKILEKYRPET 424
+A+ FK+L+KYRPE+
Sbjct: 90 SQSARQAFKLLDKYRPES 107
Score = 46.4 bits (105), Expect = 2e-05
Identities = 19/25 (76%), Positives = 22/25 (88%)
Frame = +3
Query: 576 IAHDVDPIELVLFLPALCRKMGVPY 650
IAHDV+P+E+VL LPALCRK VPY
Sbjct: 138 IAHDVNPLEIVLHLPALCRKYNVPY 162
>AC084159-4|AAK39366.1| 234|Caenorhabditis elegans Hypothetical
protein Y73B3A.18a protein.
Length = 234
Score = 120 bits (290), Expect = 7e-28
Identities = 52/78 (66%), Positives = 65/78 (83%)
Frame = +2
Query: 191 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLD 370
NPLFEKR +NF IGQ IQP +D++RFV+WPKYIR+QRQ A+LQ+RLKVPP INQF LD
Sbjct: 133 NPLFEKRARNFNIGQDIQPKKDVTRFVKWPKYIRLQRQSAILQKRLKVPPTINQFRTALD 192
Query: 371 KTTAKGLFKILEKYRPET 424
+A+ FK+L+KYRPE+
Sbjct: 193 SHSARQAFKLLDKYRPES 210
>AC084159-5|AAM69075.1| 199|Caenorhabditis elegans Hypothetical
protein Y73B3A.18b protein.
Length = 199
Score = 100 bits (239), Expect = 1e-21
Identities = 43/60 (71%), Positives = 51/60 (85%)
Frame = +2
Query: 191 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLD 370
NPLFEKR +NF IGQ IQP +D++RFV+WPKYIR+QRQ A+LQ+RLKVPP INQF LD
Sbjct: 133 NPLFEKRARNFNIGQDIQPKKDVTRFVKWPKYIRLQRQSAILQKRLKVPPTINQFRTALD 192
>AF016444-5|AAB65932.1| 330|Caenorhabditis elegans Serpentine
receptor, class ab (class a-like) protein 6 protein.
Length = 330
Score = 35.9 bits (79), Expect = 0.025
Identities = 17/43 (39%), Positives = 29/43 (67%), Gaps = 3/43 (6%)
Frame = -3
Query: 466 SFSSFP--QPLFPGCFSLRPVFLQNLEKA-LSCSLVQCLGKLV 347
SF SFP QP+ C +++P F+ N+EKA + C ++Q G+++
Sbjct: 163 SFLSFPFSQPVMNYCTAVKPGFVTNIEKAFIGCLIIQIGGRII 205
>Z49911-4|CAA90127.1| 128|Caenorhabditis elegans Hypothetical
protein M28.5 protein.
Length = 128
Score = 32.3 bits (70), Expect = 0.31
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = +3
Query: 576 IAHDVDPIELVLFLPALCRKMGVPY 650
+A D +P+E++L LP LC VPY
Sbjct: 56 MAADAEPLEILLHLPLLCEDKNVPY 80
>U23486-3|AAL38955.1| 529|Caenorhabditis elegans Hypothetical
protein F07F6.4 protein.
Length = 529
Score = 27.9 bits (59), Expect = 6.7
Identities = 12/17 (70%), Positives = 14/17 (82%)
Frame = +3
Query: 339 LRSTNLPRHWTRLQLRA 389
+RSTNL +WT LQLRA
Sbjct: 65 VRSTNLDTNWTWLQLRA 81
>AF003386-7|AAB54258.2| 412|Caenorhabditis elegans Hypothetical
protein F59E12.8 protein.
Length = 412
Score = 27.5 bits (58), Expect = 8.8
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = +2
Query: 5 FLFRPFSPKVWYTI*VTYLFVA 70
FLF PFS VW + +T L VA
Sbjct: 54 FLFHPFSTTVWLLLSLTVLVVA 75
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,053,132
Number of Sequences: 27780
Number of extensions: 227376
Number of successful extensions: 633
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 601
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 632
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1455289764
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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