Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP01_F_L05
         (654 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g62870.1 68416.m07063 60S ribosomal protein L7A (RPL7aB) 60S ...   118   3e-27
At2g47610.1 68415.m05940 60S ribosomal protein L7A (RPL7aA)           118   5e-27
At5g08180.1 68418.m00955 ribosomal protein L7Ae/L30e/S12e/Gadd45...    33   0.17 
At2g31760.1 68415.m03878 zinc finger protein-related contains lo...    30   1.2  
At5g20160.2 68418.m02400 ribosomal protein L7Ae/L30e/S12e/Gadd45...    29   3.6  
At5g20160.1 68418.m02399 ribosomal protein L7Ae/L30e/S12e/Gadd45...    29   3.6  
At4g22380.1 68417.m03234 ribosomal protein L7Ae/L30e/S12e/Gadd45...    29   3.6  
At4g12600.1 68417.m01986 ribosomal protein L7Ae/L30e/S12e/Gadd45...    29   3.6  
At5g15920.1 68418.m01862 structural maintenance of chromosomes (...    28   4.7  
At3g09210.1 68416.m01095 KOW domain-containing transcription fac...    27   8.2  

>At3g62870.1 68416.m07063 60S ribosomal protein L7A (RPL7aB) 60S
           RIBOSOMAL PROTEIN L7A - Oryza sativa,
           SWISSPROT:RL7A_ORYSA
          Length = 256

 Score =  118 bits (284), Expect = 3e-27
 Identities = 51/77 (66%), Positives = 63/77 (81%)
 Frame = +2

Query: 191 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLD 370
           NPLFE+RPK F IG  + P +DLSR+++WPK IR+QRQK +L++RLKVPP +NQFT+TLD
Sbjct: 20  NPLFERRPKQFGIGGALPPKKDLSRYIKWPKSIRLQRQKRILKQRLKVPPALNQFTKTLD 79

Query: 371 KTTAKGLFKILEKYRPE 421
           K  A  LFKIL KYRPE
Sbjct: 80  KNLATSLFKILLKYRPE 96



 Score = 51.2 bits (117), Expect = 6e-07
 Identities = 22/25 (88%), Positives = 24/25 (96%)
 Frame = +3

Query: 576 IAHDVDPIELVLFLPALCRKMGVPY 650
           IAHDVDPIELV++LPALCRKM VPY
Sbjct: 147 IAHDVDPIELVVWLPALCRKMEVPY 171


>At2g47610.1 68415.m05940 60S ribosomal protein L7A (RPL7aA)
          Length = 257

 Score =  118 bits (283), Expect = 5e-27
 Identities = 50/77 (64%), Positives = 63/77 (81%)
 Frame = +2

Query: 191 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLD 370
           NPLFE+RPK F IG  + P +DLSR+++WPK IR+QRQK +L++RLKVPP +NQFT+TLD
Sbjct: 21  NPLFERRPKQFGIGGALPPKKDLSRYIKWPKSIRLQRQKRILKQRLKVPPALNQFTKTLD 80

Query: 371 KTTAKGLFKILEKYRPE 421
           K  A  LFK+L KYRPE
Sbjct: 81  KNLATSLFKVLLKYRPE 97



 Score = 51.2 bits (117), Expect = 6e-07
 Identities = 22/25 (88%), Positives = 24/25 (96%)
 Frame = +3

Query: 576 IAHDVDPIELVLFLPALCRKMGVPY 650
           IAHDVDPIELV++LPALCRKM VPY
Sbjct: 148 IAHDVDPIELVVWLPALCRKMEVPY 172


>At5g08180.1 68418.m00955 ribosomal protein L7Ae/L30e/S12e/Gadd45
           family protein Similar to NHP2/L7Ae family proteins, see
           SWISSPROT:P32495 and PMID:2063628.
          Length = 156

 Score = 33.1 bits (72), Expect = 0.17
 Identities = 12/25 (48%), Positives = 18/25 (72%)
 Frame = +3

Query: 576 IAHDVDPIELVLFLPALCRKMGVPY 650
           IA ++ PI+++  LP LC + GVPY
Sbjct: 72  IAGNISPIDVITHLPILCEEAGVPY 96


>At2g31760.1 68415.m03878 zinc finger protein-related contains low
           similarity to zinc finger proteins and Pfam PF01485: IBR
           domain
          Length = 514

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 17/40 (42%), Positives = 22/40 (55%)
 Frame = -2

Query: 644 YTHFTA*RWQEENQLNRINIMSDDHKLRLLLXDQLGDCVC 525
           YTH+   RW E NQ +R+  MSD  K + +   QL D  C
Sbjct: 340 YTHYYV-RWVE-NQSSRLKAMSDLEKFQSVQLKQLSDNQC 377


>At5g20160.2 68418.m02400 ribosomal protein L7Ae/L30e/S12e/Gadd45
           family protein Similar to NHP2/L7Ae family proteins, see
           SWISSPROT:P32495 and PMID:2063628.
          Length = 160

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +3

Query: 576 IAHDVDPIELVLFLPALCRKMGVPY 650
           +A D +P+E++L LP L     VPY
Sbjct: 88  MAADAEPLEILLHLPLLAEDKNVPY 112


>At5g20160.1 68418.m02399 ribosomal protein L7Ae/L30e/S12e/Gadd45
           family protein Similar to NHP2/L7Ae family proteins, see
           SWISSPROT:P32495 and PMID:2063628.
          Length = 128

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +3

Query: 576 IAHDVDPIELVLFLPALCRKMGVPY 650
           +A D +P+E++L LP L     VPY
Sbjct: 56  MAADAEPLEILLHLPLLAEDKNVPY 80


>At4g22380.1 68417.m03234 ribosomal protein L7Ae/L30e/S12e/Gadd45
           family protein Similar to NHP2/L7Ae family proteins, see
           SWISSPROT:P32495 and PMID:2063628.
          Length = 128

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +3

Query: 576 IAHDVDPIELVLFLPALCRKMGVPY 650
           +A D +P+E++L LP L     VPY
Sbjct: 56  MAADAEPLEILLHLPLLAEDKNVPY 80


>At4g12600.1 68417.m01986 ribosomal protein L7Ae/L30e/S12e/Gadd45
           family protein Similar to NHP2/L7Ae family proteins, see
           SWISSPROT:P32495 and PMID:2063628.
          Length = 128

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +3

Query: 576 IAHDVDPIELVLFLPALCRKMGVPY 650
           +A D +P+E++L LP L     VPY
Sbjct: 56  MAADTEPLEILLHLPLLAEDKNVPY 80


>At5g15920.1 68418.m01862 structural maintenance of chromosomes (SMC)
            family protein (MSS2) similar to SMC-related protein MSS2
            [Arabidopsis thaliana] GI:9965743; contains Pfam profiles
            PF02483: SMC family C-terminal domain, PF02463:
            RecF/RecN/SMC N terminal domain
          Length = 1053

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 17/51 (33%), Positives = 27/51 (52%)
 Frame = -3

Query: 511  GVGPLWWRLIFLGNLSFSSFPQPLFPGCFSLRPVFLQNLEKALSCSLVQCL 359
            G+ P+  R +F   +  +S  QP  P CF L P  L  LE + +CS++  +
Sbjct: 973  GMDPINERKMFQQLVRAAS--QPNTPQCFLLTPKLLPELEYSEACSILNIM 1021


>At3g09210.1 68416.m01095 KOW domain-containing transcription factor
           family protein ; est match
          Length = 333

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = -3

Query: 478 LGNLSFSSFPQPLFPGCFSLRPVFLQNLEKAL 383
           L N S S  P+P+FPGC  +R +  + +  ++
Sbjct: 141 LKNGSISVKPKPVFPGCIFIRCILNKEIHDSI 172


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,538,524
Number of Sequences: 28952
Number of extensions: 219961
Number of successful extensions: 557
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 542
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 557
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1363910256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)