Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP01_F_K24
(648 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0683 + 10363963-10364037,10364112-10364185,10364312-103644... 144 4e-35
05_03_0610 - 16167557-16167679,16168236-16168418,16169291-161694... 141 4e-34
02_02_0695 - 13024639-13024800,13025425-13025607,13025635-13025679 69 2e-12
06_01_0983 - 7630651-7630683,7630717-7630942,7630993-7631234,763... 30 1.8
12_01_0191 + 1413287-1413346,1413504-1413632,1416819-1416998,141... 29 2.4
02_03_0395 - 18554596-18555090,18555194-18555566,18556026-18556168 29 2.4
03_04_0228 - 18989688-18989807,18990300-18990345,18990452-189905... 27 9.7
>03_02_0683 +
10363963-10364037,10364112-10364185,10364312-10364435,
10365047-10365229,10365478-10365600
Length = 192
Score = 144 bits (350), Expect = 4e-35
Identities = 68/121 (56%), Positives = 95/121 (78%)
Frame = -2
Query: 470 KAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVYDAI 291
KAF+KI +RLVRELEKKFSGK VV V R+I+ P + V +RPR+RTLT+V+D I
Sbjct: 71 KAFKKIHVRLVRELEKKFSGKDVVIVATRRIVRPPKKGSAV----QRPRTRTLTAVHDGI 126
Query: 290 LEDLVFPAEIVGKRIRVKLDGSQLIKVHLDKNQQTTIEHKVDTFQSVYKKLTGREVTFEF 111
LED+V+PAEIVGKRIR +LDG+++IK+ LD ++ E+K++TF +VY++L G++V FE+
Sbjct: 127 LEDVVYPAEIVGKRIRYRLDGAKVIKIFLDPKERNNTEYKLETFSAVYRRLCGKDVAFEY 186
Query: 110 P 108
P
Sbjct: 187 P 187
>05_03_0610 -
16167557-16167679,16168236-16168418,16169291-16169414,
16169514-16169626,16169668-16169742
Length = 205
Score = 141 bits (342), Expect = 4e-34
Identities = 66/121 (54%), Positives = 92/121 (76%)
Frame = -2
Query: 470 KAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVYDAI 291
KA++KI +RLVRELEKKFSGK VV V R+I+ P + V RPR+RTLT+V+D I
Sbjct: 84 KAYKKIHVRLVRELEKKFSGKDVVLVATRRIVRPPKKGSAVV----RPRTRTLTAVHDGI 139
Query: 290 LEDLVFPAEIVGKRIRVKLDGSQLIKVHLDKNQQTTIEHKVDTFQSVYKKLTGREVTFEF 111
LED+V+PAEIVGKR+R LDG +++K+ LD ++ E+K+DTF SVY++L G++V F++
Sbjct: 140 LEDVVYPAEIVGKRVRYHLDGRKIMKIFLDPKERNNTEYKLDTFSSVYRRLCGKDVVFDY 199
Query: 110 P 108
P
Sbjct: 200 P 200
Score = 37.1 bits (82), Expect = 0.012
Identities = 19/42 (45%), Positives = 30/42 (71%), Gaps = 2/42 (4%)
Frame = -1
Query: 603 QXXVELET-NSDLKAQLRELYITKAKEIELH-NKKSIIIYVP 484
Q +LE N +LK+ L++LYI A +++L N+K++IIYVP
Sbjct: 38 QAFFDLENGNQELKSDLKDLYINGAVQMDLPGNRKAVIIYVP 79
>02_02_0695 - 13024639-13024800,13025425-13025607,13025635-13025679
Length = 129
Score = 69.3 bits (162), Expect = 2e-12
Identities = 37/72 (51%), Positives = 51/72 (70%)
Frame = -2
Query: 470 KAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVYDAI 291
KAF+KI +RLV+ELEKKFSGK VVF R+I+ +P +K + PR+RTL +V+D I
Sbjct: 56 KAFKKIHVRLVKELEKKFSGKDVVFDATRRIV-RPLNKGSAVH---HPRTRTLITVHDGI 111
Query: 290 LEDLVFPAEIVG 255
LED+V ++G
Sbjct: 112 LEDVVSQLRLLG 123
>06_01_0983 -
7630651-7630683,7630717-7630942,7630993-7631234,
7631502-7631591,7631680-7631845,7632225-7633191,
7633402-7633591,7633908-7634048,7634416-7634736
Length = 791
Score = 29.9 bits (64), Expect = 1.8
Identities = 14/36 (38%), Positives = 22/36 (61%)
Frame = -2
Query: 278 VFPAEIVGKRIRVKLDGSQLIKVHLDKNQQTTIEHK 171
+FPA I G + KLD ++L K H D+ + ++HK
Sbjct: 589 IFPARIGGYLLDSKLDRNEL-KKHFDQTRANRLDHK 623
>12_01_0191 +
1413287-1413346,1413504-1413632,1416819-1416998,
1417747-1417938,1418533-1418673,1418785-1418912,
1419088-1419262,1419664-1419852,1420628-1420749,
1420829-1420874
Length = 453
Score = 29.5 bits (63), Expect = 2.4
Identities = 15/39 (38%), Positives = 25/39 (64%)
Frame = -2
Query: 329 PRSRTLTSVYDAILEDLVFPAEIVGKRIRVKLDGSQLIK 213
P +RTLT+ +D IL+D + A+I GK + + + +IK
Sbjct: 86 PNTRTLTNAHDGILDD-INCAQIAGKHVGDHSNCANVIK 123
>02_03_0395 - 18554596-18555090,18555194-18555566,18556026-18556168
Length = 336
Score = 29.5 bits (63), Expect = 2.4
Identities = 16/39 (41%), Positives = 21/39 (53%)
Frame = +1
Query: 334 FCLLATRVLWLGLGRILRSPTKTTCLPLNFFSSSRTSLI 450
F L A+ L L L +L T CLPL FF+ + SL+
Sbjct: 4 FSLFASLSLSLSLSFVLADITDNPCLPLIFFAGNLISLM 42
>03_04_0228 -
18989688-18989807,18990300-18990345,18990452-18990552,
18990624-18990702,18990788-18990868,18991440-18991502,
18994171-18994246,18994980-18995246,18995994-18996076,
18996792-18996922,18997043-18997174
Length = 392
Score = 27.5 bits (58), Expect = 9.7
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = -1
Query: 342 QTKEATLKDIDLCVRCYPRGLG 277
Q ++++LK CVRC+P G G
Sbjct: 184 QKRDSSLKYQTRCVRCFPNGTG 205
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,869,443
Number of Sequences: 37544
Number of extensions: 286361
Number of successful extensions: 667
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 653
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 664
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1608522592
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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