Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP01_F_K24
         (648 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_20876| Best HMM Match : Ribosomal_S7e (HMM E-Value=0)               77   4e-27
SB_50950| Best HMM Match : AAA_5 (HMM E-Value=0.0006)                  30   1.4  
SB_8510| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   1.9  
SB_17854| Best HMM Match : RnaseH (HMM E-Value=0.11)                   29   4.3  
SB_18929| Best HMM Match : BRCT (HMM E-Value=1.4e-08)                  28   7.5  
SB_19612| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.9  
SB_9051| Best HMM Match : Y_phosphatase (HMM E-Value=0)                27   9.9  

>SB_20876| Best HMM Match : Ribosomal_S7e (HMM E-Value=0)
          Length = 157

 Score = 77.0 bits (181), Expect(2) = 4e-27
 Identities = 37/51 (72%), Positives = 43/51 (84%)
 Frame = -2

Query: 473 LKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRS 321
           ++AFQKIQ RLVRELEKKFSGKHVV V  R+ILP+P+ K+R   KQKRPRS
Sbjct: 71  IRAFQKIQTRLVRELEKKFSGKHVVIVAQRRILPRPTRKSR-NQKQKRPRS 120



 Score = 65.7 bits (153), Expect = 3e-11
 Identities = 30/45 (66%), Positives = 39/45 (86%)
 Frame = -1

Query: 609 ISQXXVELETNSDLKAQLRELYITKAKEIELHNKKSIIIYVPMPK 475
           ISQ  +ELE NSD+KAQLRELYI+ AKEI++  KK+III+VP+P+
Sbjct: 26  ISQAILELEMNSDMKAQLRELYISSAKEIDVGGKKAIIIFVPVPQ 70



 Score = 62.5 bits (145), Expect(2) = 4e-27
 Identities = 25/34 (73%), Positives = 31/34 (91%)
 Frame = -2

Query: 209 HLDKNQQTTIEHKVDTFQSVYKKLTGREVTFEFP 108
           HLDK QQTTI+HK++TF +VYKKLTG++V FEFP
Sbjct: 121 HLDKTQQTTIDHKLETFSTVYKKLTGKDVVFEFP 154


>SB_50950| Best HMM Match : AAA_5 (HMM E-Value=0.0006)
          Length = 1552

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
 Frame = -1

Query: 615 TSISQXXVELETNSDLKAQLRELYITKAKEIELHNKKSIIIYVPM-PKXEGLSEDPD 448
           T ++     L  +  L+  +RELY    +E E   KKS++ ++ + PK +G+  D D
Sbjct: 175 TILTMIPARLVQSPQLQPYIRELYAEVKQEYEASIKKSMVQHILVKPKVKGVEGDED 231


>SB_8510| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 320

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 16/60 (26%), Positives = 30/60 (50%)
 Frame = +1

Query: 124 TSRPVSFLYTDWKVSTLCSIVVCWFLSKCTLMSCEPSNLTLMRLPTISAGKTKSSRIASY 303
           T+R  ++ ++DW ++  C    CW +S  T+ S     LT +++P  +  + K    A Y
Sbjct: 120 TNRCGAYYHSDWLIAIPCRRRACWTVSLITIFS---QVLTNIKVPIPAYSREKGYYTAHY 176


>SB_17854| Best HMM Match : RnaseH (HMM E-Value=0.11)
          Length = 237

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = +3

Query: 339 FVSNTSFVAGLRQDLTVSNKDYMFTTE 419
           F+ N SFV+ +  DLT S+ D+ + TE
Sbjct: 40  FIPNLSFVSAVLWDLTKSSSDFQWHTE 66


>SB_18929| Best HMM Match : BRCT (HMM E-Value=1.4e-08)
          Length = 1213

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +2

Query: 95  TNKVRGTRRSLRVPLASCIQTGRCPL 172
           TN+ +G+RRS R P  S  +T R P+
Sbjct: 294 TNETKGSRRSTRNPNQSPAETARTPI 319


>SB_19612| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 932

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = +1

Query: 184 VVCWFLSKCTLMSCEPSNLTLMRLPTISAGKTKSSR 291
           V+CW L + + +  EP N  L +L ++  GK K S+
Sbjct: 339 VICWVLGEYSYIVSEP-NTVLEQLHSLLDGKLKDSK 373


>SB_9051| Best HMM Match : Y_phosphatase (HMM E-Value=0)
          Length = 1831

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = -2

Query: 575  PTSKPNFGSFTLQKLKKLNYT 513
            P S  N+G FT+++LK  +YT
Sbjct: 1415 PLSNDNYGDFTMRRLKVSSYT 1435


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,256,125
Number of Sequences: 59808
Number of extensions: 337151
Number of successful extensions: 888
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 819
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 884
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1645141000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)