Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP01_F_K24
(648 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g48830.2 68414.m05465 40S ribosomal protein S7 (RPS7A) simila... 145 2e-35
At1g48830.1 68414.m05464 40S ribosomal protein S7 (RPS7A) simila... 145 2e-35
At5g16130.1 68418.m01884 40S ribosomal protein S7 (RPS7C) 40S ri... 142 2e-34
At3g02560.2 68416.m00247 40S ribosomal protein S7 (RPS7B) simila... 141 4e-34
At3g02560.1 68416.m00246 40S ribosomal protein S7 (RPS7B) simila... 141 4e-34
At3g19590.1 68416.m02484 WD-40 repeat family protein / mitotic c... 30 1.2
At1g49910.1 68414.m05597 WD-40 repeat family protein / mitotic c... 30 1.2
At1g11130.1 68414.m01274 leucine-rich repeat family protein / pr... 29 2.7
At1g64590.1 68414.m07321 short-chain dehydrogenase/reductase (SD... 27 8.1
>At1g48830.2 68414.m05465 40S ribosomal protein S7 (RPS7A) similar
to 40S ribosomal protein S7 homolog GI:5532505 from
[Brassica oleracea]
Length = 191
Score = 145 bits (352), Expect = 2e-35
Identities = 70/121 (57%), Positives = 95/121 (78%)
Frame = -2
Query: 470 KAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVYDAI 291
KA++KI +RLVRELEKKFSGK V+ + R+I+ +P K A KRPR+RTLTSV++AI
Sbjct: 71 KAYRKIHVRLVRELEKKFSGKDVILIATRRIV-RPPKKGSAA---KRPRNRTLTSVHEAI 126
Query: 290 LEDLVFPAEIVGKRIRVKLDGSQLIKVHLDKNQQTTIEHKVDTFQSVYKKLTGREVTFEF 111
L+D+V PAEIVGKR R +LDG++++KV LD ++ E+KV+ F +VYKKLTG++V FEF
Sbjct: 127 LDDVVLPAEIVGKRTRYRLDGTKIMKVFLDPKERNNTEYKVEAFSAVYKKLTGKDVVFEF 186
Query: 110 P 108
P
Sbjct: 187 P 187
>At1g48830.1 68414.m05464 40S ribosomal protein S7 (RPS7A) similar
to 40S ribosomal protein S7 homolog GI:5532505 from
[Brassica oleracea]
Length = 191
Score = 145 bits (352), Expect = 2e-35
Identities = 70/121 (57%), Positives = 95/121 (78%)
Frame = -2
Query: 470 KAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVYDAI 291
KA++KI +RLVRELEKKFSGK V+ + R+I+ +P K A KRPR+RTLTSV++AI
Sbjct: 71 KAYRKIHVRLVRELEKKFSGKDVILIATRRIV-RPPKKGSAA---KRPRNRTLTSVHEAI 126
Query: 290 LEDLVFPAEIVGKRIRVKLDGSQLIKVHLDKNQQTTIEHKVDTFQSVYKKLTGREVTFEF 111
L+D+V PAEIVGKR R +LDG++++KV LD ++ E+KV+ F +VYKKLTG++V FEF
Sbjct: 127 LDDVVLPAEIVGKRTRYRLDGTKIMKVFLDPKERNNTEYKVEAFSAVYKKLTGKDVVFEF 186
Query: 110 P 108
P
Sbjct: 187 P 187
>At5g16130.1 68418.m01884 40S ribosomal protein S7 (RPS7C) 40S
ribosomal protein S7 homolog - Brassica oleracea,
EMBL:AF144752
Length = 190
Score = 142 bits (343), Expect = 2e-34
Identities = 69/121 (57%), Positives = 92/121 (76%)
Frame = -2
Query: 470 KAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVYDAI 291
KAF+KI RLVRELEKKFSGK V+FV R+I+ P V +RPR+RTLTSV++A+
Sbjct: 71 KAFRKIHPRLVRELEKKFSGKDVIFVTTRRIMRPPKKGAAV----QRPRNRTLTSVHEAM 126
Query: 290 LEDLVFPAEIVGKRIRVKLDGSQLIKVHLDKNQQTTIEHKVDTFQSVYKKLTGREVTFEF 111
LED+ FPAEIVGKR R +LDGS+++KV LD ++ E+K++T VY+KLTG++V FE+
Sbjct: 127 LEDVAFPAEIVGKRTRYRLDGSKIMKVFLDAKEKNNTEYKLETMVGVYRKLTGKDVVFEY 186
Query: 110 P 108
P
Sbjct: 187 P 187
Score = 41.1 bits (92), Expect = 6e-04
Identities = 18/44 (40%), Positives = 34/44 (77%), Gaps = 2/44 (4%)
Frame = -1
Query: 609 ISQXXVELE-TNSDLKAQLRELYITKAKEIELH-NKKSIIIYVP 484
++Q +LE TN +LK++L++LYI +A +++ N+K+++IYVP
Sbjct: 23 VAQALFDLENTNQELKSELKDLYINQAVHMDISGNRKAVVIYVP 66
>At3g02560.2 68416.m00247 40S ribosomal protein S7 (RPS7B) similar
to ribosomal protein S7 GB:AAD26256 from [Secale
cereale]
Length = 191
Score = 141 bits (341), Expect = 4e-34
Identities = 67/121 (55%), Positives = 93/121 (76%)
Frame = -2
Query: 470 KAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVYDAI 291
KAF+KI +RLVRELEKKFSGK V+FV R+I+ P + V +RPR+RTLTSV++A+
Sbjct: 71 KAFRKIHLRLVRELEKKFSGKDVIFVATRRIMRPPKKGSAV----QRPRNRTLTSVHEAM 126
Query: 290 LEDLVFPAEIVGKRIRVKLDGSQLIKVHLDKNQQTTIEHKVDTFQSVYKKLTGREVTFEF 111
LED+ +PAEIVGKR R +LDG++++KV LD + E+K++T VY+KLTG++V FE+
Sbjct: 127 LEDVAYPAEIVGKRTRYRLDGTKIMKVFLDSKLKNDTEYKLETMVGVYRKLTGKDVVFEY 186
Query: 110 P 108
P
Sbjct: 187 P 187
Score = 41.9 bits (94), Expect = 4e-04
Identities = 18/44 (40%), Positives = 35/44 (79%), Gaps = 2/44 (4%)
Frame = -1
Query: 609 ISQXXVELE-TNSDLKAQLRELYITKAKEIELH-NKKSIIIYVP 484
++Q +LE TN +LK++L++LYI +A ++++ N+K+++IYVP
Sbjct: 23 VTQALFDLENTNQELKSELKDLYINQAVQMDISGNRKAVVIYVP 66
>At3g02560.1 68416.m00246 40S ribosomal protein S7 (RPS7B) similar
to ribosomal protein S7 GB:AAD26256 from [Secale
cereale]
Length = 191
Score = 141 bits (341), Expect = 4e-34
Identities = 67/121 (55%), Positives = 93/121 (76%)
Frame = -2
Query: 470 KAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVYDAI 291
KAF+KI +RLVRELEKKFSGK V+FV R+I+ P + V +RPR+RTLTSV++A+
Sbjct: 71 KAFRKIHLRLVRELEKKFSGKDVIFVATRRIMRPPKKGSAV----QRPRNRTLTSVHEAM 126
Query: 290 LEDLVFPAEIVGKRIRVKLDGSQLIKVHLDKNQQTTIEHKVDTFQSVYKKLTGREVTFEF 111
LED+ +PAEIVGKR R +LDG++++KV LD + E+K++T VY+KLTG++V FE+
Sbjct: 127 LEDVAYPAEIVGKRTRYRLDGTKIMKVFLDSKLKNDTEYKLETMVGVYRKLTGKDVVFEY 186
Query: 110 P 108
P
Sbjct: 187 P 187
Score = 41.9 bits (94), Expect = 4e-04
Identities = 18/44 (40%), Positives = 35/44 (79%), Gaps = 2/44 (4%)
Frame = -1
Query: 609 ISQXXVELE-TNSDLKAQLRELYITKAKEIELH-NKKSIIIYVP 484
++Q +LE TN +LK++L++LYI +A ++++ N+K+++IYVP
Sbjct: 23 VTQALFDLENTNQELKSELKDLYINQAVQMDISGNRKAVVIYVP 66
>At3g19590.1 68416.m02484 WD-40 repeat family protein / mitotic
checkpoint protein, putative contains 5 WD-40 repeats
(PF00400) (1 weak); similar to testis mitotic checkpoint
protein BUB3 (GB:AAC28439,SP|O43684)[Homo sapiens]
Length = 340
Score = 30.3 bits (65), Expect = 1.2
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = -1
Query: 342 QTKEATLKDIDLCVRCYPRGLG 277
Q +E++LK CVRCYP G G
Sbjct: 179 QRRESSLKYQTRCVRCYPNGTG 200
>At1g49910.1 68414.m05597 WD-40 repeat family protein / mitotic
checkpoint protein, putative contains 5 WD-40 repeats
(PF00400) (1 weak); similar to testis mitotic checkpoint
protein BUB3 (GB:AAC28439,SP:O43684)[Homo sapiens]
Length = 339
Score = 30.3 bits (65), Expect = 1.2
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = -1
Query: 342 QTKEATLKDIDLCVRCYPRGLG 277
Q +E++LK CVRCYP G G
Sbjct: 178 QRRESSLKYQTRCVRCYPNGTG 199
>At1g11130.1 68414.m01274 leucine-rich repeat family protein /
protein kinase family protein contains leucine
rich-repeat (LRR) domains Pfam:PF00560,
INTERPRO:IPR001611; contains similarity to leucine-rich
repeat transmembrane protein kinase 2 [Zea mays]
gi|3360291|gb|AAC27895
Length = 768
Score = 29.1 bits (62), Expect = 2.7
Identities = 10/34 (29%), Positives = 21/34 (61%)
Frame = +1
Query: 223 CEPSNLTLMRLPTISAGKTKSSRIASYTEVNVLE 324
C+ SN+T +R+P + G S +A ++ + V++
Sbjct: 66 CDSSNITEIRIPGMKVGGGLSDTLADFSSIQVMD 99
>At1g64590.1 68414.m07321 short-chain dehydrogenase/reductase (SDR)
family protein contains INTERPRO family IPR002198
short-chain dehydrogenase/reductase (SDR) superfamily
Length = 334
Score = 27.5 bits (58), Expect = 8.1
Identities = 13/40 (32%), Positives = 23/40 (57%)
Frame = -2
Query: 269 AEIVGKRIRVKLDGSQLIKVHLDKNQQTTIEHKVDTFQSV 150
AE RI + +++I +HLD + T++ VD F+S+
Sbjct: 71 AEETKARILSEFPDAEIIVMHLDLSSLTSVRRFVDDFESL 110
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,024,555
Number of Sequences: 28952
Number of extensions: 231930
Number of successful extensions: 590
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 575
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 585
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1344285648
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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