Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP01_F_K23
         (511 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_4350| Best HMM Match : L15 (HMM E-Value=3.9e-10)                    77   1e-14
SB_3035| Best HMM Match : PAN (HMM E-Value=2.9e-08)                    31   0.55 
SB_50904| Best HMM Match : NACHT (HMM E-Value=2.3e-05)                 27   9.0  
SB_26471| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.0  

>SB_4350| Best HMM Match : L15 (HMM E-Value=3.9e-10)
          Length = 173

 Score = 76.6 bits (180), Expect = 1e-14
 Identities = 40/86 (46%), Positives = 47/86 (54%)
 Frame = +2

Query: 239 LXKNKNFCPVLNLDKLWTLVSEQTRLKYASAPDGKVPVINIVKAXXXXXXXXXXXPKQPV 418
           L +N    P +NLDK+W+LVSEQTR  Y +  DG VPVI++VKA           PKQPV
Sbjct: 88  LTRNAYHKPSINLDKVWSLVSEQTRQNYKNKKDGPVPVIDVVKAGYYKVLGKGLLPKQPV 147

Query: 419 IVXXXXXXXXXXXXXXDVGGACVLSA 496
           IV               VGGACVL A
Sbjct: 148 IVKAKFFSRRAEDKIKAVGGACVLMA 173



 Score = 36.7 bits (81), Expect = 0.011
 Identities = 15/34 (44%), Positives = 20/34 (58%)
 Frame = +1

Query: 175 RINMDKYHPGYFGKLGMRNFHFXKEQEFLSSFEL 276
           R + +  HPGYFGK+GMR+FH  +      S  L
Sbjct: 67  RGSYEAIHPGYFGKVGMRHFHLTRNAYHKPSINL 100


>SB_3035| Best HMM Match : PAN (HMM E-Value=2.9e-08)
          Length = 240

 Score = 31.1 bits (67), Expect = 0.55
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = -1

Query: 229 FSYQVCQSIQDGTCPC*FCDGAHHQHYHDLLDAYGA 122
           F   +C+S    T PC   D  H +H  DL+D  GA
Sbjct: 60  FMNNLCRSYNYNTTPCQLSDSDHLEHPSDLVDKPGA 95


>SB_50904| Best HMM Match : NACHT (HMM E-Value=2.3e-05)
          Length = 1122

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +1

Query: 202 GYFGKLGMRNFHFXKEQEFLSSF 270
           GYF KL ++ F   K +EF+SS+
Sbjct: 779 GYFRKLEIKGFGDSKVEEFISSY 801


>SB_26471| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 566

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 6/14 (42%), Positives = 12/14 (85%)
 Frame = +3

Query: 183 HGQVPSWILWQTWY 224
           +G+  SW++W+TW+
Sbjct: 342 YGEFSSWLVWRTWF 355


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,791,810
Number of Sequences: 59808
Number of extensions: 291793
Number of successful extensions: 695
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 546
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 695
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1123894172
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)