Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP01_F_K23
         (511 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g23290.1 68414.m02913 60S ribosomal protein L27A (RPL27aB) si...    79   2e-15
At1g70600.1 68414.m08133 60S ribosomal protein L27A (RPL27aC) id...    76   2e-14
At1g12960.1 68414.m01505 60S ribosomal protein L27A (RPL27aA) si...    31   0.34 
At2g16100.1 68415.m01846 hypothetical protein                          29   2.4  
At4g24490.1 68417.m03510 geranylgeranyl transferase alpha subuni...    28   4.2  

>At1g23290.1 68414.m02913 60S ribosomal protein L27A (RPL27aB)
           similar to 60S RIBOSOMAL PROTEIN L27A GB:P49637
           GI:1710530 from [Arabidopsis thaliana]
          Length = 146

 Score = 78.6 bits (185), Expect = 2e-15
 Identities = 37/69 (53%), Positives = 41/69 (59%)
 Frame = +1

Query: 52  MATSKKKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGYFGKLGMRN 231
           MAT+ KK RK RGHVS                 NAGG HHHRI  DKYHPGYFGK+GMR 
Sbjct: 1   MATALKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60

Query: 232 FHFXKEQEF 258
           FH  + + F
Sbjct: 61  FHKLRNKFF 69



 Score = 49.2 bits (112), Expect = 2e-06
 Identities = 29/85 (34%), Positives = 44/85 (51%), Gaps = 1/85 (1%)
 Frame = +2

Query: 245 KNKNFCPVLNLDKLWTLVSEQTRLKYASAPDGKVPVINIVKAXXXXXXXXXXXPK-QPVI 421
           +NK FCP++NLDKLW+LV E  + K  S+ D  VP+I++ +            P+ +P +
Sbjct: 65  RNKFFCPIVNLDKLWSLVPEDVKAK--SSKD-NVPLIDVTQHGFFKVLGKGHLPENKPFV 121

Query: 422 VXXXXXXXXXXXXXXDVGGACVLSA 496
           V              + GGA VL+A
Sbjct: 122 VKAKLISKTAEKKIKEAGGAVVLTA 146


>At1g70600.1 68414.m08133 60S ribosomal protein L27A (RPL27aC)
           identical to 60S ribosomal protein L27A GB:P49637
           [Arabidopsis thaliana]
          Length = 146

 Score = 75.8 bits (178), Expect = 2e-14
 Identities = 36/69 (52%), Positives = 39/69 (56%)
 Frame = +1

Query: 52  MATSKKKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGYFGKLGMRN 231
           M T  KK RK RGHVS                 NAGG HHHRI  DKYHPGYFGK+GMR 
Sbjct: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60

Query: 232 FHFXKEQEF 258
           FH  + + F
Sbjct: 61  FHKLRNKFF 69



 Score = 48.8 bits (111), Expect = 2e-06
 Identities = 29/85 (34%), Positives = 43/85 (50%), Gaps = 1/85 (1%)
 Frame = +2

Query: 245 KNKNFCPVLNLDKLWTLVSEQTRLKYASAPDGKVPVINIVKAXXXXXXXXXXXPK-QPVI 421
           +NK FCP++NLDKLW+LV E  + K  S  D  VP+I++ +            P+ +P +
Sbjct: 65  RNKFFCPIVNLDKLWSLVPEDVKAK--STKD-NVPLIDVTQHGFFKVLGKGHLPENKPFV 121

Query: 422 VXXXXXXXXXXXXXXDVGGACVLSA 496
           V              + GGA VL+A
Sbjct: 122 VKAKLISKTAEKKIKEAGGAVVLTA 146


>At1g12960.1 68414.m01505 60S ribosomal protein L27A (RPL27aA)
           similar to GB:BAA96068 from [Panax ginseng]
          Length = 104

 Score = 31.5 bits (68), Expect = 0.34
 Identities = 10/18 (55%), Positives = 16/18 (88%)
 Frame = +2

Query: 245 KNKNFCPVLNLDKLWTLV 298
           +NK +C ++NLDKLW++V
Sbjct: 46  RNKFYCQIVNLDKLWSMV 63



 Score = 27.9 bits (59), Expect = 4.2
 Identities = 12/16 (75%), Positives = 13/16 (81%)
 Frame = +1

Query: 52 MATSKKKTRKLRGHVS 99
          M TS+KKTR LR HVS
Sbjct: 1  MTTSRKKTRNLREHVS 16


>At2g16100.1 68415.m01846 hypothetical protein 
          Length = 250

 Score = 28.7 bits (61), Expect = 2.4
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +3

Query: 165 APSQNQHGQVPSWILWQTW 221
           +P  +Q  Q+P WILW+ W
Sbjct: 20  SPRTSQFHQLPLWILWRIW 38


>At4g24490.1 68417.m03510 geranylgeranyl transferase alpha
           subunit-related / RAB geranylgeranyltransferase alpha
           subunit-related low similarity to SP|Q08602 [Rattus
           norvegicus]
          Length = 683

 Score = 27.9 bits (59), Expect = 4.2
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = -2

Query: 315 SLVCSETNVQSLSKFKTGQKFLFFXKVEISHTK 217
           +LVC   N  SLS+  + +K LF   +++SH +
Sbjct: 517 NLVCLRLNNLSLSRIASVEKLLFVQMLDLSHNE 549


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,546,725
Number of Sequences: 28952
Number of extensions: 209967
Number of successful extensions: 550
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 526
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 549
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 917929344
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)