Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP01_F_K20
         (435 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    27   0.10 
AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle nu...    21   5.1  
AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.    20   8.9  

>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10
           protein.
          Length = 2700

 Score = 26.6 bits (56), Expect = 0.10
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = -2

Query: 254 TDIDAFQGFGEQTWPIWLYIYSRRFQDGGNFLTSXRQHHHPP 129
           TD+D F+G     WP+ L   +R  +  GN L   +Q  +PP
Sbjct: 515 TDLDDFKGVCGMKWPL-LSTINRHLR--GNELLPMQQSQNPP 553


>AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle
           nuclear receptor protein.
          Length = 407

 Score = 21.0 bits (42), Expect = 5.1
 Identities = 11/26 (42%), Positives = 13/26 (50%)
 Frame = +3

Query: 159 EKISTILKAAAVDVEPYWPGLFAKAL 236
           EKI  +L+       P  PG FAK L
Sbjct: 340 EKIYGVLEEYTRTTHPNEPGRFAKLL 365


>AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.
          Length = 717

 Score = 20.2 bits (40), Expect = 8.9
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = +1

Query: 43  ELRPTATCTFKTKNGV 90
           E+RP A C  + KN +
Sbjct: 462 EIRPDAICVSQLKNAL 477


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 76,666
Number of Sequences: 336
Number of extensions: 1477
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used:  9670396
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)