Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP01_F_K20
         (435 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC644.15 |rpp101|rpp1-1|60S acidic ribosomal protein Rpp1-1|Sc...    56   3e-09
SPBC3B9.13c |rpp102|rpp1-2|60S acidic ribosomal protein Rpp1-2|S...    53   2e-08
SPCP1E11.09c |rpp103|rpp1-3|60S acidic ribosomal protein Rpp1-3|...    50   2e-07
SPAC144.07c |||conserved eukaryotic protein|Schizosaccharomyces ...    25   6.7  
SPAC20G8.02 |||phospholipase|Schizosaccharomyces pombe|chr 1|||M...    25   6.7  
SPBC354.15 |fap1||L-pipecolate oxidase|Schizosaccharomyces pombe...    25   6.7  
SPAC1250.01 |snf21|SPAC29A4.21|ATP-dependent DNA helicase Snf21|...    24   8.8  

>SPAC644.15 |rpp101|rpp1-1|60S acidic ribosomal protein
           Rpp1-1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 109

 Score = 55.6 bits (128), Expect = 3e-09
 Identities = 24/43 (55%), Positives = 34/43 (79%)
 Frame = +3

Query: 153 TGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLITNIGSG 281
           T +K+ ++ KAA VDVEP W  +FAKALEG ++++L+ NIGSG
Sbjct: 23  TSDKLLSLTKAANVDVEPIWATIFAKALEGKDLKELLLNIGSG 65



 Score = 25.0 bits (52), Expect = 5.0
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = +2

Query: 86  VSKAELACVYSALILVDDDV 145
           +S +ELA  YSALIL D+ +
Sbjct: 1   MSASELATSYSALILADEGI 20


>SPBC3B9.13c |rpp102|rpp1-2|60S acidic ribosomal protein
           Rpp1-2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 110

 Score = 53.2 bits (122), Expect = 2e-08
 Identities = 23/42 (54%), Positives = 33/42 (78%)
 Frame = +3

Query: 153 TGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLITNIGS 278
           T +K+ ++ KAA VDVEP W  +FAKALEG ++++L+ NIGS
Sbjct: 23  TSDKLLSLTKAANVDVEPIWATIFAKALEGKDLKELLLNIGS 64



 Score = 25.0 bits (52), Expect = 5.0
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = +2

Query: 86  VSKAELACVYSALILVDDDV 145
           +S +ELA  YSALIL D+ +
Sbjct: 1   MSASELATSYSALILADEGI 20


>SPCP1E11.09c |rpp103|rpp1-3|60S acidic ribosomal protein
           Rpp1-3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 109

 Score = 50.0 bits (114), Expect = 2e-07
 Identities = 21/42 (50%), Positives = 32/42 (76%)
 Frame = +3

Query: 153 TGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLITNIGS 278
           T +K+ ++ KA  V+VEP W  +FAKALEG ++++L+ NIGS
Sbjct: 23  TSDKLLSLTKAGNVEVEPIWATIFAKALEGKDLKELLLNIGS 64


>SPAC144.07c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 315

 Score = 24.6 bits (51), Expect = 6.7
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +2

Query: 50  GLRQLARSKLKMVSKAELACVYSAL 124
           G+ QL    + ++SKA+L C Y  L
Sbjct: 159 GMLQLDMPHVNILSKADLLCTYGTL 183


>SPAC20G8.02 |||phospholipase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 757

 Score = 24.6 bits (51), Expect = 6.7
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -1

Query: 258 GHGH*CLPRLWRTDL 214
           G+G  CLP LWR D+
Sbjct: 402 GNGVQCLPLLWRQDI 416


>SPBC354.15 |fap1||L-pipecolate oxidase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 412

 Score = 24.6 bits (51), Expect = 6.7
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = -1

Query: 261 SGHGH*CLPRLWRTDLANMALHLQPPLSRWWKFSHQ 154
           SGHG    P L +  +  M   L+ PL + W++  +
Sbjct: 357 SGHGFKFFPILGKYSIGCMFRELEEPLLKKWRWKKE 392


>SPAC1250.01 |snf21|SPAC29A4.21|ATP-dependent DNA helicase
           Snf21|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1199

 Score = 24.2 bits (50), Expect = 8.8
 Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
 Frame = -1

Query: 126 MRAE*THANSAFDTIFS-FERASCRRP*LKREQARLSSDKQR 4
           +R +  H      TI +  ER SCRRP L  +  RL+   +R
Sbjct: 213 LRHQVMHCQPHLRTIVNAVERMSCRRPKLVPQATRLTEVLER 254


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,296,461
Number of Sequences: 5004
Number of extensions: 21835
Number of successful extensions: 52
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 52
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 156095170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)