Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP01_F_K20
         (435 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_41974| Best HMM Match : No HMM Matches (HMM E-Value=.)              62   3e-10
SB_43135| Best HMM Match : CMAS (HMM E-Value=0)                        35   0.025
SB_2072| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   5.0  

>SB_41974| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 110

 Score = 61.7 bits (143), Expect = 3e-10
 Identities = 25/42 (59%), Positives = 35/42 (83%)
 Frame = +3

Query: 153 TGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLITNIGS 278
           T +KI T++KAA ++VEP+WPGLFAKAL+G N+ DLI + G+
Sbjct: 24  TADKIETLVKAAKINVEPFWPGLFAKALQGHNIADLILSAGA 65



 Score = 38.3 bits (85), Expect = 0.003
 Identities = 18/22 (81%), Positives = 19/22 (86%)
 Frame = +2

Query: 83  MVSKAELACVYSALILVDDDVA 148
           M S +ELACVYSALIL DDDVA
Sbjct: 1   MASTSELACVYSALILHDDDVA 22


>SB_43135| Best HMM Match : CMAS (HMM E-Value=0)
          Length = 254

 Score = 35.1 bits (77), Expect = 0.025
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = -2

Query: 263 DQVTDIDAFQGFGEQTWPIWLYIYSRRFQDGGN 165
           DQ+  I+ F+  G++ WP +  + S R + GG+
Sbjct: 102 DQIVSIEMFEAVGQENWPTYFQMLSERLKQGGS 134


>SB_2072| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 390

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = -1

Query: 231 LWRTDLANMALHLQPPLSRWWKFSHQLXATSSSTRM 124
           LW TDL + +   QPP  R W  +HQ  A   + R+
Sbjct: 116 LWHTDLLS-SRQRQPPPERNWYQAHQATAKFFTRRL 150


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,194,376
Number of Sequences: 59808
Number of extensions: 170084
Number of successful extensions: 310
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 300
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 309
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 834771332
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)