Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP01_F_K20
         (435 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC087079-6|AAK27864.1|  111|Caenorhabditis elegans Ribosomal pro...    73   7e-14
U89307-1|AAB48625.1|  111|Caenorhabditis elegans ribosomal prote...    70   8e-13
L23646-3|AAK67236.1| 1283|Caenorhabditis elegans Hypothetical pr...    27   4.4  
U39745-7|AAA80449.1|  612|Caenorhabditis elegans Uncoordinated p...    27   5.9  
M80241-1|AAA28157.1|  612|Caenorhabditis elegans unc-6 protein.        27   5.9  
AF036704-5|AAB88558.2|  360|Caenorhabditis elegans Hypothetical ...    27   7.8  

>AC087079-6|AAK27864.1|  111|Caenorhabditis elegans Ribosomal
           protein, acidic protein 1 protein.
          Length = 111

 Score = 73.3 bits (172), Expect = 7e-14
 Identities = 31/43 (72%), Positives = 40/43 (93%)
 Frame = +3

Query: 153 TGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLITNIGSG 281
           TGEKI+T+LKAA V+ EPYWPGLFAKALEG++V++LIT++ SG
Sbjct: 24  TGEKIATLLKAANVEFEPYWPGLFAKALEGVDVKNLITSVSSG 66



 Score = 35.5 bits (78), Expect = 0.017
 Identities = 16/22 (72%), Positives = 18/22 (81%)
 Frame = +2

Query: 83  MVSKAELACVYSALILVDDDVA 148
           M S  ELACVY+ALIL DD+VA
Sbjct: 1   MASNQELACVYAALILQDDEVA 22


>U89307-1|AAB48625.1|  111|Caenorhabditis elegans ribosomal protein
           P1 homolog protein.
          Length = 111

 Score = 69.7 bits (163), Expect = 8e-13
 Identities = 30/43 (69%), Positives = 39/43 (90%)
 Frame = +3

Query: 153 TGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLITNIGSG 281
           TGEKI+T+LKAA V+ EP WPGLFAKALEG++V++LIT++ SG
Sbjct: 24  TGEKIATLLKAANVEFEPNWPGLFAKALEGVDVKNLITSVSSG 66



 Score = 35.5 bits (78), Expect = 0.017
 Identities = 16/22 (72%), Positives = 18/22 (81%)
 Frame = +2

Query: 83  MVSKAELACVYSALILVDDDVA 148
           M S  ELACVY+ALIL DD+VA
Sbjct: 1   MASNQELACVYAALILQDDEVA 22


>L23646-3|AAK67236.1| 1283|Caenorhabditis elegans Hypothetical
           protein F44E2.4 protein.
          Length = 1283

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 12/41 (29%), Positives = 21/41 (51%)
 Frame = +1

Query: 1   CSLFVRTQTCLFSLELRPTATCTFKTKNGVKS*ISMCLLCS 123
           CSLF R + CL +   + +  C+F +     + I +  +CS
Sbjct: 467 CSLFARYEQCLSATVFKNSQRCSFASPLNSLARIGLAPICS 507


>U39745-7|AAA80449.1|  612|Caenorhabditis elegans Uncoordinated
           protein 6 protein.
          Length = 612

 Score = 27.1 bits (57), Expect = 5.9
 Identities = 12/40 (30%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
 Frame = +2

Query: 134 DDDVAXNW*ENFHHLESGG-CRCRAILARSVRQSLGRHQC 250
           DD+V   +  +   L  GG C+C    +R +   +GR+ C
Sbjct: 271 DDEVKQRYFYSMGELAVGGRCKCNGHASRCIFDKMGRYTC 310


>M80241-1|AAA28157.1|  612|Caenorhabditis elegans unc-6 protein.
          Length = 612

 Score = 27.1 bits (57), Expect = 5.9
 Identities = 12/40 (30%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
 Frame = +2

Query: 134 DDDVAXNW*ENFHHLESGG-CRCRAILARSVRQSLGRHQC 250
           DD+V   +  +   L  GG C+C    +R +   +GR+ C
Sbjct: 271 DDEVKQRYFYSMGELAVGGRCKCNGHASRCIFDKMGRYTC 310


>AF036704-5|AAB88558.2|  360|Caenorhabditis elegans Hypothetical
           protein ZK185.1 protein.
          Length = 360

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 12/33 (36%), Positives = 21/33 (63%)
 Frame = -1

Query: 105 ANSAFDTIFSFERASCRRP*LKREQARLSSDKQ 7
           A++++  IFSF +    R  +KRE AR S +++
Sbjct: 190 ASTSYTIIFSFHKVDKARRRIKREMARKSLERR 222


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,402,068
Number of Sequences: 27780
Number of extensions: 130922
Number of successful extensions: 270
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 264
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 270
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 735312162
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)