Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP01_F_K20
(435 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g00810.2 68417.m00112 60S acidic ribosomal protein P1 (RPP1B)... 58 3e-09
At4g00810.1 68417.m00111 60S acidic ribosomal protein P1 (RPP1B)... 58 3e-09
At1g01100.2 68414.m00013 60S acidic ribosomal protein P1 (RPP1A)... 57 4e-09
At1g01100.1 68414.m00012 60S acidic ribosomal protein P1 (RPP1A)... 57 4e-09
At5g47700.1 68418.m05889 60S acidic ribosomal protein P1 (RPP1C) 57 6e-09
At5g24510.1 68418.m02889 60s acidic ribosomal protein P1, putative 54 4e-08
At4g24175.1 68417.m03469 expressed protein 29 1.0
At5g16860.1 68418.m01975 pentatricopeptide (PPR) repeat-containi... 28 2.4
At5g42950.1 68418.m05236 GYF domain-containing protein contains ... 27 5.5
At1g11290.1 68414.m01297 pentatricopeptide (PPR) repeat-containi... 27 7.2
At3g26780.1 68416.m03350 phosphoglycerate/bisphosphoglycerate mu... 26 9.5
>At4g00810.2 68417.m00112 60S acidic ribosomal protein P1 (RPP1B)
similar to acidic ribosomal protein p1
Length = 113
Score = 58.0 bits (134), Expect = 3e-09
Identities = 25/43 (58%), Positives = 33/43 (76%)
Frame = +3
Query: 153 TGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLITNIGSG 281
T +KI+T++KAA V++E YWP LFAK E NV DLI N+G+G
Sbjct: 24 TSDKIATLVKAAGVEIESYWPMLFAKMAEKRNVTDLIMNVGAG 66
>At4g00810.1 68417.m00111 60S acidic ribosomal protein P1 (RPP1B)
similar to acidic ribosomal protein p1
Length = 113
Score = 58.0 bits (134), Expect = 3e-09
Identities = 25/43 (58%), Positives = 33/43 (76%)
Frame = +3
Query: 153 TGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLITNIGSG 281
T +KI+T++KAA V++E YWP LFAK E NV DLI N+G+G
Sbjct: 24 TSDKIATLVKAAGVEIESYWPMLFAKMAEKRNVTDLIMNVGAG 66
>At1g01100.2 68414.m00013 60S acidic ribosomal protein P1 (RPP1A)
similar to 60S ACIDIC RIBOSOMAL PROTEIN P1 GB:O23095
from [Arabidopsis thaliana]
Length = 112
Score = 57.2 bits (132), Expect = 4e-09
Identities = 25/43 (58%), Positives = 32/43 (74%)
Frame = +3
Query: 153 TGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLITNIGSG 281
T +KI+T++KAA V +E YWP LFAK E NV DLI N+G+G
Sbjct: 24 TADKIATLVKAAGVSIESYWPMLFAKMAEKRNVTDLIMNVGAG 66
>At1g01100.1 68414.m00012 60S acidic ribosomal protein P1 (RPP1A)
similar to 60S ACIDIC RIBOSOMAL PROTEIN P1 GB:O23095
from [Arabidopsis thaliana]
Length = 112
Score = 57.2 bits (132), Expect = 4e-09
Identities = 25/43 (58%), Positives = 32/43 (74%)
Frame = +3
Query: 153 TGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLITNIGSG 281
T +KI+T++KAA V +E YWP LFAK E NV DLI N+G+G
Sbjct: 24 TADKIATLVKAAGVSIESYWPMLFAKMAEKRNVTDLIMNVGAG 66
>At5g47700.1 68418.m05889 60S acidic ribosomal protein P1 (RPP1C)
Length = 113
Score = 56.8 bits (131), Expect = 6e-09
Identities = 25/43 (58%), Positives = 32/43 (74%)
Frame = +3
Query: 153 TGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLITNIGSG 281
T +KI+T++KAA V +E YWP LFAK E NV DLI N+G+G
Sbjct: 24 TADKIATLVKAAGVTIESYWPMLFAKMAEKRNVTDLIMNVGAG 66
>At5g24510.1 68418.m02889 60s acidic ribosomal protein P1, putative
Length = 111
Score = 54.0 bits (124), Expect = 4e-08
Identities = 24/43 (55%), Positives = 30/43 (69%)
Frame = +3
Query: 153 TGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLITNIGSG 281
T E IS ++K A V+VE YWP LFAK E N+ DLI N+G+G
Sbjct: 23 TAENISKLVKTANVNVESYWPSLFAKLCEKKNIDDLIMNVGAG 65
Score = 29.1 bits (62), Expect = 1.4
Identities = 12/20 (60%), Positives = 16/20 (80%)
Frame = +2
Query: 86 VSKAELACVYSALILVDDDV 145
+S +ELAC Y+ALIL DD +
Sbjct: 1 MSTSELACTYAALILHDDGI 20
>At4g24175.1 68417.m03469 expressed protein
Length = 306
Score = 29.5 bits (63), Expect = 1.0
Identities = 16/43 (37%), Positives = 26/43 (60%)
Frame = +3
Query: 129 WWMMMLPXTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRD 257
W M + +G+++ ILKAA++ E Y + AK L G +VR+
Sbjct: 102 WGMELASFSGDQVKQILKAASLGEEVYDALMLAKRL-GSDVRE 143
>At5g16860.1 68418.m01975 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 850
Score = 28.3 bits (60), Expect = 2.4
Identities = 12/42 (28%), Positives = 20/42 (47%)
Frame = +2
Query: 77 LKMVSKAELACVYSALILVDDDVAXNW*ENFHHLESGGCRCR 202
L++ A Y + I +D D+ FHH ++G C C+
Sbjct: 807 LRVCGDCHTAFTYMSRI-IDHDIILRDSSRFHHFKNGSCSCK 847
>At5g42950.1 68418.m05236 GYF domain-containing protein contains
Pfam profile: PF02213 GYF domain
Length = 1714
Score = 27.1 bits (57), Expect = 5.5
Identities = 17/46 (36%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
Frame = -2
Query: 260 QVTDIDAFQGFGEQTWPIWLYIYSR-RFQDGGNFLTSXRQHHHPPG 126
QVT +G GE T ++ R R GG+ TS HPPG
Sbjct: 238 QVTSFSHSRGRGENTA---IFSAGRGRMSPGGSIFTSAPNQSHPPG 280
>At1g11290.1 68414.m01297 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 809
Score = 26.6 bits (56), Expect = 7.2
Identities = 12/44 (27%), Positives = 22/44 (50%)
Frame = +2
Query: 68 RSKLKMVSKAELACVYSALILVDDDVAXNW*ENFHHLESGGCRC 199
R L++ + A Y +L+ + V + + FHH ++G C C
Sbjct: 763 RKNLRVCADCHNATKYISLVTGREIVVRDM-QRFHHFKNGACSC 805
>At3g26780.1 68416.m03350 phosphoglycerate/bisphosphoglycerate mutase
family protein similar to X4 protein GI:21386798, Y4
protein GI:21386800 from [Silene dioica]; contains Pfam
profiles PF00300: phosphoglycerate mutase family,
PF01535: PPR repeat
Length = 1053
Score = 26.2 bits (55), Expect = 9.5
Identities = 9/24 (37%), Positives = 13/24 (54%)
Frame = +2
Query: 128 LVDDDVAXNW*ENFHHLESGGCRC 199
+VD + + FHH + GGC C
Sbjct: 1026 IVDREFVVRDAKRFHHFKDGGCSC 1049
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,109,467
Number of Sequences: 28952
Number of extensions: 125329
Number of successful extensions: 324
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 317
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 324
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 683042040
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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