Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP01_F_K19
(594 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_37698| Best HMM Match : Ribosomal_S3Ae (HMM E-Value=5e-21) 92 4e-19
SB_21643| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.1
SB_37029| Best HMM Match : 7tm_1 (HMM E-Value=4.2039e-45) 29 2.8
SB_50701| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.7
SB_45038| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.7
SB_40531| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.9
SB_22008| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.5
SB_53398| Best HMM Match : RVT_1 (HMM E-Value=7.8e-12) 27 8.6
SB_7925| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.6
SB_9937| Best HMM Match : Fer2 (HMM E-Value=6.9) 27 8.6
SB_3682| Best HMM Match : efhand (HMM E-Value=7.4e-05) 27 8.6
>SB_37698| Best HMM Match : Ribosomal_S3Ae (HMM E-Value=5e-21)
Length = 147
Score = 91.9 bits (218), Expect = 4e-19
Identities = 41/68 (60%), Positives = 54/68 (79%)
Frame = +2
Query: 389 TLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCYAQHTXVRXIXKKMCEIITRDVTN 568
TLIEA +DVKTTDGY+LR+FCIGFT + +KT YA+HT ++ I KKM +IITR+V+
Sbjct: 2 TLIEAAVDVKTTDGYLLRMFCIGFTKRRQNQIKKTAYAKHTQIKAIRKKMVDIITREVST 61
Query: 569 SELXEVVN 592
++L EVVN
Sbjct: 62 NDLKEVVN 69
>SB_21643| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1974
Score = 29.5 bits (63), Expect = 2.1
Identities = 11/30 (36%), Positives = 21/30 (70%)
Frame = +2
Query: 221 VFEVSLADLQADTDAERSFRKFRLIAEYVQ 310
+F + +D+QA+++ FR+F L+ EYV+
Sbjct: 1176 IFNNTFSDVQANSNQIWKFRRFELVMEYVE 1205
>SB_37029| Best HMM Match : 7tm_1 (HMM E-Value=4.2039e-45)
Length = 1102
Score = 29.1 bits (62), Expect = 2.8
Identities = 15/57 (26%), Positives = 32/57 (56%), Gaps = 2/57 (3%)
Frame = -1
Query: 408 MLASMRVCHFLTIHLSLSVVRSMPWKLQSTLRPCTYSAINLNLRKDLSA--SVSACR 244
++ SM +C ++ + +SL R + + +L PC Y ++++L + + S+S CR
Sbjct: 948 VVMSMSLCRYVHVVMSLCPCRYVHVVMSMSLCPCRYVVMSMSLCRYIHVVMSMSLCR 1004
>SB_50701| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 311
Score = 28.7 bits (61), Expect = 3.7
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = +1
Query: 85 IVDPFTRKDWYDVKAPSMFSKRQ 153
+V+P+ KDW D SMFS RQ
Sbjct: 98 LVEPWRWKDWEDFTQSSMFSGRQ 120
>SB_45038| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 561
Score = 28.7 bits (61), Expect = 3.7
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = -1
Query: 282 LRKDLSASVSACRSARETSKTLPFNPSEAIFV 187
LRK L S + RE + L FNP E+ +V
Sbjct: 302 LRKQLIDMASVAKDLREIDELLKFNPDESAYV 333
>SB_40531| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 237
Score = 28.3 bits (60), Expect = 4.9
Identities = 16/49 (32%), Positives = 25/49 (51%)
Frame = -1
Query: 174 VDKRGADLPLAEHRRSLDIVPIFASEWVDNLLLNTFFTALRQAFIFPDR 28
VD + + +++ D+ PIF + V LLL T FT L+ + DR
Sbjct: 159 VDNQFVPFQTLQTKKAFDVEPIFNGKDVFLLLLWTLFTYLQVISVLNDR 207
>SB_22008| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 162
Score = 27.9 bits (59), Expect = 6.5
Identities = 14/55 (25%), Positives = 26/55 (47%)
Frame = +2
Query: 155 SAPRLSTVPRXTKIASEGLKGRVFEVSLADLQADTDAERSFRKFRLIAEYVQGRN 319
+AP P+ GL+ +V ++S + Q D D + + K+ + E GR+
Sbjct: 90 TAPLAGMDPQIVNSVILGLQQKVDDLSRQNRQQDVDLDEQYNKYAPVGEENDGRD 144
>SB_53398| Best HMM Match : RVT_1 (HMM E-Value=7.8e-12)
Length = 924
Score = 27.5 bits (58), Expect = 8.6
Identities = 24/88 (27%), Positives = 40/88 (45%)
Frame = -1
Query: 423 VVFTSMLASMRVCHFLTIHLSLSVVRSMPWKLQSTLRPCTYSAINLNLRKDLSASVSACR 244
V T + + + C F T+ SL R + ++R + N L +++A R
Sbjct: 101 VFVTDLRSKAKTCEFGTLQDSLIKDRIVCGIDSDSIR----ERLLRNTELTLDTAINAVR 156
Query: 243 SARETSKTLPFNPSEAIFVXLGTVDKRG 160
+A ETSKT N + + G ++KRG
Sbjct: 157 AA-ETSKTQIENLKDGASLAAGALNKRG 183
>SB_7925| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 682
Score = 27.5 bits (58), Expect = 8.6
Identities = 14/45 (31%), Positives = 22/45 (48%)
Frame = -1
Query: 324 STLRPCTYSAINLNLRKDLSASVSACRSARETSKTLPFNPSEAIF 190
S LR Y AI + L D + ++T P+NP++A+F
Sbjct: 331 SVLRAAMYGAIAVLLYPDPEITSKLGTRPQDTFPNTPWNPADAVF 375
>SB_9937| Best HMM Match : Fer2 (HMM E-Value=6.9)
Length = 229
Score = 27.5 bits (58), Expect = 8.6
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = +2
Query: 347 LTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFC 451
L T + + +WQT + N+ VK TDG + C
Sbjct: 142 LPTCQTTMLFSEWQTKLVCNLTVKKTDGKMQMYTC 176
>SB_3682| Best HMM Match : efhand (HMM E-Value=7.4e-05)
Length = 340
Score = 27.5 bits (58), Expect = 8.6
Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
Frame = +2
Query: 227 EVSLADLQADTDAERS--FRKFRLIAEYV-QGRNVLCNFHGMDLTTDKLRWMVKKWQTL 394
E+ A L+ D D+ + F +F +A + QG+ ++ NF + TD + + V W TL
Sbjct: 186 EIKEAMLEVDVDSSGTVDFFEFLCVARLITQGKALVNNFQLSIVQTDGITFDVFDWSTL 244
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,353,715
Number of Sequences: 59808
Number of extensions: 371289
Number of successful extensions: 891
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 831
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 890
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1427401750
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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