Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP01_F_K18
         (590 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3E7.08c |rad13||DNA repair nuclease Rad13|Schizosaccharomyce...    31   0.095
SPBC543.02c |||DNAJ/TPR domain protein DNAJC7 family|Schizosacch...    29   0.38 
SPBC29A3.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces...    28   0.89 
SPAC17A2.04c |||HSP chaperone complex subunit |Schizosaccharomyc...    26   3.6  
SPBC31E1.05 |gle1||RNA export factor Gle1 |Schizosaccharomyces p...    26   3.6  
SPBC32H8.13c |mok12||alpha-1,3-glucan synthase Mok12|Schizosacch...    26   3.6  
SPCC1322.14c |vtc4||vacuolar transporter chaperone |Schizosaccha...    25   6.2  
SPAC25H1.06 |||histone acetyltransferase complex subunit |Schizo...    25   8.3  
SPBC776.10c |cog6||Golgi transport complex peripheral subunit Co...    25   8.3  

>SPBC3E7.08c |rad13||DNA repair nuclease Rad13|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1112

 Score = 31.5 bits (68), Expect = 0.095
 Identities = 13/40 (32%), Positives = 23/40 (57%)
 Frame = +3

Query: 267 EEERLELCQKLDKELDDFIDSLEKRRYTEGWPEDRWEEEM 386
           EEE +    + +KE D F+  L +R  TE W ++ +E+ +
Sbjct: 696 EEEMIIRMAEEEKEYDRFVSELNQRHETEEWNQEAFEKRL 735


>SPBC543.02c |||DNAJ/TPR domain protein DNAJC7
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 476

 Score = 29.5 bits (63), Expect = 0.38
 Identities = 15/30 (50%), Positives = 16/30 (53%)
 Frame = +1

Query: 496 ELASNYKEDGNFNFKHKNYRLAILGYTEGI 585
           ELA   K  GN  +K K Y  AI  YTE I
Sbjct: 21  ELAEKQKAIGNAFYKEKKYAEAIKAYTEAI 50


>SPBC29A3.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 398

 Score = 28.3 bits (60), Expect = 0.89
 Identities = 13/43 (30%), Positives = 24/43 (55%)
 Frame = +3

Query: 222 IMAEANKSDVKSPMTEEERLELCQKLDKELDDFIDSLEKRRYT 350
           I+ +A KS +K P T  + L  C +  +++ D +   EK+ +T
Sbjct: 28  ILKDAKKSCLKDPTTSMKELVACSEKTQQVFDDLKRTEKKFHT 70


>SPAC17A2.04c |||HSP chaperone complex subunit |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 358

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +1

Query: 496 ELASNYKEDGNFNFKHKNYRLAILGYTEGI 585
           E+A N++E GN  F  K Y+ A   YT+ +
Sbjct: 62  EVAQNFREHGNECFASKRYKDAEEFYTKAL 91


>SPBC31E1.05 |gle1||RNA export factor Gle1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 480

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = -3

Query: 564 YCKSIILVFEIEISILFVITS*FXQVCFLLD-QT*DLRDPL 445
           +CKS++   E E+++  +      +VC LL  Q  DL+D L
Sbjct: 277 FCKSVVKQAEAEVAVNPISAYPLAKVCLLLQTQNADLKDLL 317


>SPBC32H8.13c |mok12||alpha-1,3-glucan synthase
            Mok12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2352

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 14/45 (31%), Positives = 25/45 (55%)
 Frame = +3

Query: 234  ANKSDVKSPMTEEERLELCQKLDKELDDFIDSLEKRRYTEGWPED 368
            A+ SD+ +  +E+   + C   D E+D+F  +L+ + Y EG   D
Sbjct: 1745 ASDSDISNSTSEDINKDECVSKDIEVDNFALNLQSQSY-EGDSND 1788


>SPCC1322.14c |vtc4||vacuolar transporter chaperone
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 721

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 17/67 (25%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
 Frame = +3

Query: 195 KLLYLKSN*IMAEANKSDVKSPMTEEERLELCQKLDKELDDFIDSLEKRRYTEGWPEDRW 374
           K  Y+  + +  E  + + +   +EE+  +  + L+KELD  + S +K +  E     R+
Sbjct: 16  KYSYVNYDKLKKEIKRRNDQGGWSEEDESDFVELLEKELDK-VYSFQKNKSAEVMERIRF 74

Query: 375 -EEEMDK 392
            EE+ D+
Sbjct: 75  CEEQTDE 81


>SPAC25H1.06 |||histone acetyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 408

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = -2

Query: 148 NLFIILYHNNVFFVENYFIKRTCSLMFHKHNPI 50
           NL+I +  N + F+ +  +++TCS      NP+
Sbjct: 246 NLYIAVNDNGIAFICDNRLQQTCSKTVKASNPL 278


>SPBC776.10c |cog6||Golgi transport complex peripheral subunit Cog6
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 675

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 12/44 (27%), Positives = 20/44 (45%)
 Frame = +3

Query: 285 LCQKLDKELDDFIDSLEKRRYTEGWPEDRWEEEMDKHPFFMKST 416
           L   L K  D   D    + Y   W   +W++++DK   F++ T
Sbjct: 554 LSDLLQKIADTTDDKQALKNYLHSW---KWDQQIDKFSTFIRKT 594


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,201,501
Number of Sequences: 5004
Number of extensions: 43550
Number of successful extensions: 137
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 256184654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)