Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP01_F_K18
(590 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_05_0195 + 23142830-23143714,23144288-23144314,23144657-231448... 38 0.008
03_05_0859 - 28329837-28329919,28330062-28330131,28330498-283305... 31 0.52
12_01_1025 - 10506144-10506226,10506643-10506699,10507502-105076... 30 1.2
02_01_0099 + 726576-727105,727899-728048,728510-728635,728726-72... 30 1.6
01_06_1201 - 35380338-35380496,35381200-35381322,35381521-353820... 29 2.8
06_01_0449 - 3176135-3176329,3176531-3177289,3177420-3177905,317... 29 3.7
05_01_0024 - 164618-165139,166884-166949,167046-167216,167321-16... 28 4.8
03_03_0141 + 14779557-14779600,14779686-14779749,14779827-147798... 28 4.8
10_08_1045 - 22535516-22535593,22535681-22535756,22535843-225359... 28 6.4
>05_05_0195 +
23142830-23143714,23144288-23144314,23144657-23144866,
23144976-23145242,23146290-23146376,23146495-23146553,
23147166-23147768,23148063-23148192,23148570-23149100,
23149636-23149743,23149911-23150456,23150957-23151079,
23151494-23151709
Length = 1263
Score = 37.5 bits (83), Expect = 0.008
Identities = 16/33 (48%), Positives = 22/33 (66%)
Frame = +3
Query: 282 ELCQKLDKELDDFIDSLEKRRYTEGWPEDRWEE 380
+L Q+LD+ +D ID + YT WP+DRWEE
Sbjct: 701 DLQQQLDQFMDGRIDGSILKLYTLHWPQDRWEE 733
>03_05_0859 -
28329837-28329919,28330062-28330131,28330498-28330549,
28330671-28330798,28331283-28331483,28332183-28332317,
28333116-28333275,28333824-28334019,28334070-28334252,
28334382-28334507,28335090-28335214,28335389-28335541,
28337267-28337472
Length = 605
Score = 31.5 bits (68), Expect = 0.52
Identities = 17/41 (41%), Positives = 22/41 (53%)
Frame = +1
Query: 463 SSLIQKKTHLXELASNYKEDGNFNFKHKNYRLAILGYTEGI 585
S++ K+ E A KE GN FK K ++ AI YTE I
Sbjct: 476 SNVSSKQAMSEEAAEAAKEKGNIAFKEKQWQKAINFYTEAI 516
>12_01_1025 -
10506144-10506226,10506643-10506699,10507502-10507605,
10507884-10507937,10508107-10508193,10509027-10509214,
10509793-10509854,10510084-10510354,10510756-10510834,
10511715-10511913,10512816-10512960,10513324-10513416,
10514449-10514736
Length = 569
Score = 30.3 bits (65), Expect = 1.2
Identities = 19/63 (30%), Positives = 28/63 (44%)
Frame = +3
Query: 267 EEERLELCQKLDKELDDFIDSLEKRRYTEGWPEDRWEEEMDKHPFFMKSTPENGELSPLA 446
EE + +K DK + +F+ ++K G EE HP F S NG + P
Sbjct: 208 EENSFQRRRKWDKRMLEFVQQVDKPLIWCGDLNVSHEEIDVSHPDFFSSAKLNGYIPPNK 267
Query: 447 EGL 455
EG+
Sbjct: 268 EGV 270
>02_01_0099 +
726576-727105,727899-728048,728510-728635,728726-729714,
729776-729818,730101-730218,730743-730853
Length = 688
Score = 29.9 bits (64), Expect = 1.6
Identities = 9/18 (50%), Positives = 15/18 (83%)
Frame = +3
Query: 357 WPEDRWEEEMDKHPFFMK 410
+PED+W +++DKH F+K
Sbjct: 455 FPEDKWLDQVDKHQMFIK 472
>01_06_1201 - 35380338-35380496,35381200-35381322,35381521-35382066,
35382285-35382392,35382695-35383225,35383614-35383743,
35384225-35385081,35385303-35385408,35387119-35387230,
35389255-35389347,35389723-35389771,35389859-35389897,
35390671-35390757,35391613-35391873,35391957-35392166,
35392413-35393507
Length = 1501
Score = 29.1 bits (62), Expect = 2.8
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +3
Query: 285 LCQKLDKELDDFIDSLEKRRYTEGWPEDRWEE 380
L ++L++ +D ID R YT W +RW+E
Sbjct: 959 LQEQLNQFMDRRIDGNNLRLYTSHWAPERWQE 990
>06_01_0449 -
3176135-3176329,3176531-3177289,3177420-3177905,
3178302-3178421,3178637-3178703,3178784-3179007,
3179149-3179234,3179936-3180509
Length = 836
Score = 28.7 bits (61), Expect = 3.7
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = +1
Query: 496 ELASNYKEDGNFNFKHKNYRLAILGYTEGI 585
E A ++++ GN FK K Y+ A + YTE +
Sbjct: 183 EAADHHRDRGNDFFKQKRYQEAAMHYTEAM 212
>05_01_0024 -
164618-165139,166884-166949,167046-167216,167321-167422,
167538-167600,167679-167825,168234-168359,168742-168921,
169183-169322,169688-169861,170096-170123
Length = 572
Score = 28.3 bits (60), Expect = 4.8
Identities = 12/43 (27%), Positives = 24/43 (55%)
Frame = +1
Query: 457 QISSLIQKKTHLXELASNYKEDGNFNFKHKNYRLAILGYTEGI 585
Q+ L++ + E + K G+ F++K+Y +A+ YT+ I
Sbjct: 280 QVPQLVEVSSEAKERSLEAKSRGDDAFRNKDYLVAVDAYTQAI 322
>03_03_0141 +
14779557-14779600,14779686-14779749,14779827-14779860,
14780308-14780438,14780655-14780728,14780869-14780947,
14781054-14781143,14781401-14781474,14782317-14782404,
14782654-14782780,14782864-14782968,14783446-14783569,
14783651-14783702,14784150-14784255,14784770-14784831,
14784912-14784956,14785527-14785625,14785772-14785924
Length = 516
Score = 28.3 bits (60), Expect = 4.8
Identities = 9/17 (52%), Positives = 14/17 (82%)
Frame = -1
Query: 269 FGHWGFYITFISLGHDL 219
FG+WG Y+ +SLG++L
Sbjct: 303 FGYWGMYLIGVSLGYNL 319
>10_08_1045 -
22535516-22535593,22535681-22535756,22535843-22535946,
22536048-22536176,22536539-22536700,22537029-22537259,
22537345-22537428,22537515-22537583,22537671-22537739,
22537827-22537889,22537913-22538052,22538527-22539097
Length = 591
Score = 27.9 bits (59), Expect = 6.4
Identities = 13/48 (27%), Positives = 23/48 (47%)
Frame = +3
Query: 210 KSN*IMAEANKSDVKSPMTEEERLELCQKLDKELDDFIDSLEKRRYTE 353
KS+ I + N D+ E ++ E C DK++ D +K + +E
Sbjct: 250 KSSQIQKDKNVQDITRDSEESKQSESCIPTDKDVQDITSDSKKSKQSE 297
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,835,134
Number of Sequences: 37544
Number of extensions: 236771
Number of successful extensions: 613
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 597
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 613
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1400060088
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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