Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP01_F_K18
         (590 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_13361| Best HMM Match : TPR_2 (HMM E-Value=0.0021)                  52   4e-07
SB_39311| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.70 
SB_38212| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.1  
SB_41460| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.1  
SB_11948| Best HMM Match : rve (HMM E-Value=5.3e-11)                   29   2.1  
SB_50802| Best HMM Match : PRC (HMM E-Value=8.3)                       29   3.8  
SB_13733| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.8  
SB_49584| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.0  
SB_17842| Best HMM Match : RVT_1 (HMM E-Value=2.2e-29)                 28   5.0  
SB_39948| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.0  
SB_13311| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.0  
SB_17634| Best HMM Match : TPR_2 (HMM E-Value=0.06)                    28   6.6  
SB_22025| Best HMM Match : TPR_MLP1_2 (HMM E-Value=0.12)               28   6.6  
SB_11774| Best HMM Match : M (HMM E-Value=8.5e-09)                     27   8.7  

>SB_13361| Best HMM Match : TPR_2 (HMM E-Value=0.0021)
          Length = 304

 Score = 52.0 bits (119), Expect = 4e-07
 Identities = 28/80 (35%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
 Frame = +3

Query: 243 SDVKSPMTEEERLELCQKLDKELDDFIDSLEKRRYTEGWPEDRWEEEMDKHPFFMKSTPE 422
           +D K+P T EE   L Q+LD  +D  I+  +  +Y +   E+ WEEE++  P FM   PE
Sbjct: 2   ADEKAPKTAEE---LDQELDNYIDKMIEKNKNYKYKDRLSEETWEEEIENIPLFMTKPPE 58

Query: 423 NGE-LSPLAEGLANLKFDPE 479
            G+ +S     L  +K++ E
Sbjct: 59  EGKSISDSIAALQAIKYEDE 78



 Score = 41.1 bits (92), Expect = 7e-04
 Identities = 17/30 (56%), Positives = 23/30 (76%)
 Frame = +1

Query: 496 ELASNYKEDGNFNFKHKNYRLAILGYTEGI 585
           E A +YKE+GN+ +K KN++ AI  YTEGI
Sbjct: 82  ENALSYKEEGNYEYKRKNFKKAIDAYTEGI 111


>SB_39311| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 916

 Score = 31.1 bits (67), Expect = 0.70
 Identities = 22/64 (34%), Positives = 31/64 (48%)
 Frame = +3

Query: 270 EERLELCQKLDKELDDFIDSLEKRRYTEGWPEDRWEEEMDKHPFFMKSTPENGELSPLAE 449
           EERL   +K   E DD + +L K    +GWP+ R E         +++TP  G  S  A+
Sbjct: 382 EERLRQLKKAT-ETDDTLQTL-KSVILKGWPDSRQELPTQLALLEIRNTPTQGAGSSPAQ 439

Query: 450 GLAN 461
            L N
Sbjct: 440 RLLN 443


>SB_38212| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1892

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 16/49 (32%), Positives = 20/49 (40%)
 Frame = +1

Query: 409 SQLLKMVSFLHWQRVSQISSLIQKKTHLXELASNYKEDGNFNFKHKNYR 555
           S  LK V  LHW        +++   H  EL  N       NF H NY+
Sbjct: 215 SNALKGVQSLHW-------IIVEDSDHKSELVKNLASRSGLNFTHLNYK 256


>SB_41460| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1669

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 17/45 (37%), Positives = 24/45 (53%)
 Frame = +3

Query: 270 EERLELCQKLDKELDDFIDSLEKRRYTEGWPEDRWEEEMDKHPFF 404
           EERL   +K   E+DD + +L K    +GWP+ R E      P+F
Sbjct: 718 EERLRQLKKAT-EMDDTLQTL-KSVILKGWPDSRQELPTQVTPYF 760


>SB_11948| Best HMM Match : rve (HMM E-Value=5.3e-11)
          Length = 418

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 17/45 (37%), Positives = 24/45 (53%)
 Frame = +3

Query: 270 EERLELCQKLDKELDDFIDSLEKRRYTEGWPEDRWEEEMDKHPFF 404
           EERL   +K   E+DD + +L K    +GWP+ R E      P+F
Sbjct: 70  EERLRQLKKAT-EMDDTLQTL-KSVILKGWPDSRQELPTQVTPYF 112


>SB_50802| Best HMM Match : PRC (HMM E-Value=8.3)
          Length = 426

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = +3

Query: 339 RRYTEGWPEDRWEEEMD 389
           +RY EGW +  WEE++D
Sbjct: 220 QRYAEGWKDGVWEEKID 236


>SB_13733| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1455

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 15/37 (40%), Positives = 18/37 (48%)
 Frame = +3

Query: 267 EEERLELCQKLDKELDDFIDSLEKRRYTEGWPEDRWE 377
           E+E LE      K LDD  D L +  +  G  ED WE
Sbjct: 520 EDEELEKLDPTLKNLDDDYDLLNEDTFGSGALEDDWE 556


>SB_49584| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 311

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = +3

Query: 282 ELCQKLDKELDDFIDSLEKRRYTEGWPE 365
           E  QK +K L  F+DS+EK   T+ +P+
Sbjct: 187 ETIQKQEKVLQAFLDSIEKHNATKTYPK 214


>SB_17842| Best HMM Match : RVT_1 (HMM E-Value=2.2e-29)
          Length = 1167

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 17/45 (37%), Positives = 23/45 (51%)
 Frame = +3

Query: 270 EERLELCQKLDKELDDFIDSLEKRRYTEGWPEDRWEEEMDKHPFF 404
           EERL   +K   E DD + +L K    +GWP+ R E      P+F
Sbjct: 754 EERLRQLKKAT-ETDDTLQTL-KSVILKGWPDSRQELPTQVTPYF 796


>SB_39948| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 727

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 17/45 (37%), Positives = 23/45 (51%)
 Frame = +3

Query: 270 EERLELCQKLDKELDDFIDSLEKRRYTEGWPEDRWEEEMDKHPFF 404
           EERL   +K   E DD + +L K    +GWP+ R E      P+F
Sbjct: 374 EERLRQLKKAT-ETDDTLQTL-KSVILKGWPDSRQELPTQVTPYF 416


>SB_13311| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 6406

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 23/94 (24%), Positives = 41/94 (43%), Gaps = 4/94 (4%)
 Frame = +3

Query: 222  IMAEANKSDVKSPMTEEERLELCQKLDKELDDFIDSLEKR-RYTEG--WPEDRWEEEMDK 392
            +++E   +  K P+   +      KLD  LD+  D +  R R  E      D +E   D+
Sbjct: 3580 LISEEVVATTKDPVQAADIESQLAKLDNSLDELADKVNSRKRALEAIISQGDAFEGACDE 3639

Query: 393  H-PFFMKSTPENGELSPLAEGLANLKFDPEENTP 491
               +  K+   + +L P++  L  LK+   E+ P
Sbjct: 3640 FLRWLTKTERAHAQLRPISADLDTLKYQKTEHEP 3673


>SB_17634| Best HMM Match : TPR_2 (HMM E-Value=0.06)
          Length = 118

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 13/24 (54%), Positives = 16/24 (66%)
 Frame = +1

Query: 502 ASNYKEDGNFNFKHKNYRLAILGY 573
           A + KE+GN  FK KNYR A+  Y
Sbjct: 32  AFSLKEEGNGCFKQKNYREAMKKY 55


>SB_22025| Best HMM Match : TPR_MLP1_2 (HMM E-Value=0.12)
          Length = 495

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 15/54 (27%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
 Frame = +3

Query: 231 EANKSDVKSPMTEEERL-ELCQKLDKELDDFIDSLEKRRYTEGWPEDRWEEEMD 389
           E ++S ++    E+ +L + C+ L  +LD     L+K +     P+D+  EE+D
Sbjct: 180 EQHQSTIEKQDQEKSKLTQTCRDLKAKLDTLRAELKKLKEKRKTPDDKAMEELD 233


>SB_11774| Best HMM Match : M (HMM E-Value=8.5e-09)
          Length = 1998

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
 Frame = +3

Query: 303  KELDDFIDSLEKRRYTEGWPEDRWEEEMDKHPFFMKSTPEN--GELSPLAEGLANLK 467
            K L++ +  L+K    E  P+D W+EE+D     +KS  E    E+  L E L  +K
Sbjct: 1294 KRLENIVSDLQKE--LENRPDDDWKEEVDG----LKSRNEELLKEVESLKENLKEIK 1344


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,436,500
Number of Sequences: 59808
Number of extensions: 279781
Number of successful extensions: 704
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 660
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 702
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1434459094
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)