Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP01_F_K18
         (590 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U28739-8|AAB93452.2|  419|Caenorhabditis elegans Hypothetical pr...    59   3e-09
Z68114-1|CAA92152.1|  451|Caenorhabditis elegans Hypothetical pr...    34   0.087
Z54238-7|CAJ90498.1| 1861|Caenorhabditis elegans Hypothetical pr...    32   0.35 
Z49911-9|CAA90133.1|  682|Caenorhabditis elegans Hypothetical pr...    31   0.61 
Z71266-5|CAD56593.1|  370|Caenorhabditis elegans Hypothetical pr...    29   1.9  
Z71266-4|CAA95843.1|  478|Caenorhabditis elegans Hypothetical pr...    29   1.9  
AF077542-5|AAC26299.1|  883|Caenorhabditis elegans Hypothetical ...    29   1.9  
U58735-1|AAC48148.1|  891|Caenorhabditis elegans Hypothetical pr...    29   3.3  
AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse trans...    29   3.3  
AF025462-7|AAB71003.1|  805|Caenorhabditis elegans Hypothetical ...    29   3.3  
U80032-2|AAM15555.1|  643|Caenorhabditis elegans Osmotic stress ...    27   7.5  
AY360470-1|AAR12229.1|  643|Caenorhabditis elegans osmotic stres...    27   7.5  
Z48544-2|CAA88437.1|  766|Caenorhabditis elegans Hypothetical pr...    27   10.0 
AL117204-43|CAB55131.2|  917|Caenorhabditis elegans Hypothetical...    27   10.0 

>U28739-8|AAB93452.2|  419|Caenorhabditis elegans Hypothetical
           protein C17G10.2 protein.
          Length = 419

 Score = 58.8 bits (136), Expect = 3e-09
 Identities = 28/83 (33%), Positives = 47/83 (56%), Gaps = 5/83 (6%)
 Frame = +3

Query: 252 KSPMTEEERLELCQKLDKELDDFIDSL-----EKRRYTEGWPEDRWEEEMDKHPFFMKST 416
           K   TE ER  L +KLD +LD F++ +     +K+   + +  D W +E+D+HP FM   
Sbjct: 6   KKKFTESERAALAKKLDDDLDQFMEEMAARKSDKKEERKPFDFDDWCKEIDQHPAFMTEM 65

Query: 417 PENGELSPLAEGLANLKFDPEEN 485
           P +G+     E L ++K+D E++
Sbjct: 66  PTDGKYQDTIEALQSMKYDKEDD 88



 Score = 31.5 bits (68), Expect = 0.46
 Identities = 14/28 (50%), Positives = 19/28 (67%)
 Frame = +1

Query: 502 ASNYKEDGNFNFKHKNYRLAILGYTEGI 585
           A ++KE+GN +FK K YR A   Y+ GI
Sbjct: 95  AEHHKEEGNKHFKFKKYRWATDCYSNGI 122


>Z68114-1|CAA92152.1|  451|Caenorhabditis elegans Hypothetical
           protein F17A2.1 protein.
          Length = 451

 Score = 33.9 bits (74), Expect = 0.087
 Identities = 18/47 (38%), Positives = 30/47 (63%), Gaps = 1/47 (2%)
 Frame = +3

Query: 255 SPMTEEERLELCQKLDKELDDFIDSLEKRRYTEGWP-EDRWEEEMDK 392
           S  +EEE ++   + D+E+   +DSLEK++ T+G P E    ++MDK
Sbjct: 194 SETSEEEDVDSDGECDEEVQAVLDSLEKKKITDGNPIEVEQHKKMDK 240


>Z54238-7|CAJ90498.1| 1861|Caenorhabditis elegans Hypothetical protein
            T28C6.9 protein.
          Length = 1861

 Score = 31.9 bits (69), Expect = 0.35
 Identities = 18/67 (26%), Positives = 32/67 (47%)
 Frame = +3

Query: 267  EEERLELCQKLDKELDDFIDSLEKRRYTEGWPEDRWEEEMDKHPFFMKSTPENGELSPLA 446
            + E+LEL + + K   D  +  +++   +GW ++ W E+  K     K T    EL+   
Sbjct: 1400 QAEKLELEKIIQKLEVDIAEKEQEKTDNDGWNDEDWREDDQKETESEKLTQLRNELTARI 1459

Query: 447  EGLANLK 467
            E L + K
Sbjct: 1460 EQLESQK 1466


>Z49911-9|CAA90133.1|  682|Caenorhabditis elegans Hypothetical
           protein M28.7 protein.
          Length = 682

 Score = 31.1 bits (67), Expect = 0.61
 Identities = 16/51 (31%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
 Frame = +3

Query: 288 CQKLDKELDDFIDSLEKRRYTEGWPEDRWEEEMDKHPFFMKS-TPENGELS 437
           CQ+L ++LDD  + +EK +  E + ++   E++DK    + + +PE  +LS
Sbjct: 50  CQELHRQLDDHRNRIEKAKTDETYKKENALEQLDKLKQRLTALSPEKEQLS 100


>Z71266-5|CAD56593.1|  370|Caenorhabditis elegans Hypothetical
           protein R06C7.5b protein.
          Length = 370

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 19/56 (33%), Positives = 25/56 (44%)
 Frame = +3

Query: 297 LDKELDDFIDSLEKRRYTEGWPEDRWEEEMDKHPFFMKSTPENGELSPLAEGLANL 464
           L +   D ID ++  R    WP  R EE   KH   M      G+L P A G+ +L
Sbjct: 50  LKQVTQDAIDEMKSNRDVFDWPFIRSEERKLKHD-VMAHNHAFGKLCPTAAGIIHL 104


>Z71266-4|CAA95843.1|  478|Caenorhabditis elegans Hypothetical
           protein R06C7.5a protein.
          Length = 478

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 19/56 (33%), Positives = 25/56 (44%)
 Frame = +3

Query: 297 LDKELDDFIDSLEKRRYTEGWPEDRWEEEMDKHPFFMKSTPENGELSPLAEGLANL 464
           L +   D ID ++  R    WP  R EE   KH   M      G+L P A G+ +L
Sbjct: 50  LKQVTQDAIDEMKSNRDVFDWPFIRSEERKLKHD-VMAHNHAFGKLCPTAAGIIHL 104


>AF077542-5|AAC26299.1|  883|Caenorhabditis elegans Hypothetical
           protein Y57G7A.6 protein.
          Length = 883

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 14/36 (38%), Positives = 23/36 (63%)
 Frame = +3

Query: 225 MAEANKSDVKSPMTEEERLELCQKLDKELDDFIDSL 332
           MAEA K+D  S ++E ++L++ Q L K   D + +L
Sbjct: 539 MAEAYKNDSSSEISELKKLKVLQDLSKPFGDAVGAL 574


>U58735-1|AAC48148.1|  891|Caenorhabditis elegans Hypothetical
           protein F20B4.7 protein.
          Length = 891

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -1

Query: 458 CETLCQWRKLTIFRS*LHKKWMFV 387
           CET   W   ++F+  +HK+W FV
Sbjct: 120 CETNRLWHTNSMFKKPMHKRWTFV 143


>AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse
           transcriptase protein.
          Length = 1066

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -1

Query: 458 CETLCQWRKLTIFRS*LHKKWMFV 387
           CET   W   ++F+  +HK+W FV
Sbjct: 291 CETNRLWHTNSMFKKPMHKRWTFV 314


>AF025462-7|AAB71003.1|  805|Caenorhabditis elegans Hypothetical
           protein K10F12.5 protein.
          Length = 805

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -1

Query: 458 CETLCQWRKLTIFRS*LHKKWMFV 387
           CET   W   ++F+  +HK+W FV
Sbjct: 30  CETNRLWHTNSMFKKPMHKRWTFV 53


>U80032-2|AAM15555.1|  643|Caenorhabditis elegans Osmotic stress
           resistant protein 1 protein.
          Length = 643

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 19/68 (27%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
 Frame = +3

Query: 291 QKLDKELDDFIDS-LEKRRYTEGWPEDRWEEEMDKHPFFMKSTPENGELSPLAEGLANLK 467
           Q+ D++ DD  D  + +RR ++G P+   E +       +KS+P   EL   AE  + L 
Sbjct: 247 QEEDEDDDDLEDEDVPRRRSSDGEPQSEAEHQRRDLARRLKSSPRLKELLQNAEVQSLLS 306

Query: 468 FDPEENTP 491
           +    ++P
Sbjct: 307 YQRMRDSP 314


>AY360470-1|AAR12229.1|  643|Caenorhabditis elegans osmotic stress
           resistance protein protein.
          Length = 643

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 19/68 (27%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
 Frame = +3

Query: 291 QKLDKELDDFIDS-LEKRRYTEGWPEDRWEEEMDKHPFFMKSTPENGELSPLAEGLANLK 467
           Q+ D++ DD  D  + +RR ++G P+   E +       +KS+P   EL   AE  + L 
Sbjct: 247 QEEDEDDDDLEDEDVPRRRSSDGEPQSEAEHQRRDLARRLKSSPRLKELLQNAEVQSLLS 306

Query: 468 FDPEENTP 491
           +    ++P
Sbjct: 307 YQRMRDSP 314


>Z48544-2|CAA88437.1|  766|Caenorhabditis elegans Hypothetical
           protein ZK945.3 protein.
          Length = 766

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = +3

Query: 237 NKSDVKSPMTEEERLELCQKLDKELDDFIDSLEKRRYTEGWPED 368
           NK D K  +  EE+  L  K+DK + D ++ L+K   T  +  D
Sbjct: 31  NKVDRKRIVKIEEKAALKSKVDKAVKDELERLKKSSSTSVFDND 74


>AL117204-43|CAB55131.2|  917|Caenorhabditis elegans Hypothetical
           protein Y116A8C.26a protein.
          Length = 917

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 17/68 (25%), Positives = 29/68 (42%)
 Frame = +3

Query: 282 ELCQKLDKELDDFIDSLEKRRYTEGWPEDRWEEEMDKHPFFMKSTPENGELSPLAEGLAN 461
           E  +K  K L+ ++  + +      +PE      MD+H F   S  +    +PL +   +
Sbjct: 621 EFLEKRTKALNMYLSCILQPHLLRNYPE------MDRHVFDFLSQKKYANSNPLTKKFMS 674

Query: 462 LKFDPEEN 485
             FDP  N
Sbjct: 675 AMFDPIRN 682


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,968,616
Number of Sequences: 27780
Number of extensions: 236714
Number of successful extensions: 765
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 745
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 764
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1247656244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)