Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP01_F_K18
(590 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g07370.1 68416.m00879 tetratricopeptide repeat (TPR)-containi... 29 1.8
At2g40400.2 68415.m04982 expressed protein similar to GI:7572912... 29 1.8
At2g40400.1 68415.m04981 expressed protein similar to GI:7572912... 29 1.8
At3g56140.1 68416.m06240 expressed protein At2g40400 - Arabidops... 29 2.3
At4g03440.1 68417.m00471 ankyrin repeat family protein contains ... 28 5.4
At3g48425.1 68416.m05286 endonuclease/exonuclease/phosphatase fa... 27 7.1
At3g57330.1 68416.m06381 calcium-transporting ATPase, plasma mem... 27 9.4
At3g56800.1 68416.m06317 calmodulin-2/3/5 (CAM3) identical to ca... 27 9.4
At3g43810.1 68416.m04682 calmodulin-7 (CAM7) almost identical to... 27 9.4
At2g41560.1 68415.m05136 calcium-transporting ATPase 4, plasma m... 27 9.4
At2g41110.1 68415.m05078 calmodulin-2/3/5 (CAM2) (CAL1) almost i... 27 9.4
At2g27030.3 68415.m03247 calmodulin-2/3/5 (CAM5) (TCH1) identica... 27 9.4
At2g27030.2 68415.m03246 calmodulin-2/3/5 (CAM5) (TCH1) identica... 27 9.4
At2g27030.1 68415.m03245 calmodulin-2/3/5 (CAM5) (TCH1) identica... 27 9.4
>At3g07370.1 68416.m00879 tetratricopeptide repeat (TPR)-containing
protein / U-box domain-containing protein similar to
serologically defined colon cancer antigen 7 GB:5031963
GI:3170178 [Homo sapiens];
Length = 278
Score = 29.5 bits (63), Expect = 1.8
Identities = 14/29 (48%), Positives = 17/29 (58%)
Frame = +1
Query: 499 LASNYKEDGNFNFKHKNYRLAILGYTEGI 585
+A KEDGN FK + + AI YTE I
Sbjct: 9 MAERLKEDGNNCFKKERFGAAIDAYTEAI 37
>At2g40400.2 68415.m04982 expressed protein similar to GI:7572912
(At3g56140)[Arabidopsis thaliana]
Length = 735
Score = 29.5 bits (63), Expect = 1.8
Identities = 11/34 (32%), Positives = 20/34 (58%)
Frame = +3
Query: 279 LELCQKLDKELDDFIDSLEKRRYTEGWPEDRWEE 380
L+L ++L++ +D +D + Y WP RW+E
Sbjct: 197 LDLQEQLNQYMDKRMDGEVLKSYVSHWPVQRWQE 230
>At2g40400.1 68415.m04981 expressed protein similar to GI:7572912
(At3g56140)[Arabidopsis thaliana]
Length = 735
Score = 29.5 bits (63), Expect = 1.8
Identities = 11/34 (32%), Positives = 20/34 (58%)
Frame = +3
Query: 279 LELCQKLDKELDDFIDSLEKRRYTEGWPEDRWEE 380
L+L ++L++ +D +D + Y WP RW+E
Sbjct: 197 LDLQEQLNQYMDKRMDGEVLKSYVSHWPVQRWQE 230
>At3g56140.1 68416.m06240 expressed protein At2g40400 - Arabidopsis
thaliana, EMBL:AC007020
Length = 745
Score = 29.1 bits (62), Expect = 2.3
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = +3
Query: 279 LELCQKLDKELDDFIDSLEKRRYTEGWPEDRWEE 380
L+L +L++ +D +D + Y WP RW+E
Sbjct: 206 LDLQDQLNQYMDKRMDGETLKSYVTHWPAQRWQE 239
>At4g03440.1 68417.m00471 ankyrin repeat family protein contains
ankyrin repeats, Pfam domain PF00023
Length = 751
Score = 27.9 bits (59), Expect = 5.4
Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
Frame = +1
Query: 391 NIHFL*SQLLKMVSFLHWQRVSQISSLIQKKTHLXELAS---NYKEDGNF 531
++H +L + +HW R S+ SL + THL E A+ N +D +F
Sbjct: 217 DLHEKTKELHEKTKDMHWLRRSKSKSLSNESTHLMETAACLVNANQDVSF 266
>At3g48425.1 68416.m05286 endonuclease/exonuclease/phosphatase
family protein similar to SP|P51173|APEA_DICDI
DNA-(apurinic or apyrimidinic site) lyase (EC
4.2.99.18)(Class II
apurinic/apyrimidinic(AP)-endonuclease) {Dictyostelium
discoideum}; contains Pfam profile PF03372:
Endonuclease/Exonuclease/phosphatase family
Length = 364
Score = 27.5 bits (58), Expect = 7.1
Identities = 19/73 (26%), Positives = 30/73 (41%), Gaps = 1/73 (1%)
Frame = +3
Query: 267 EEERLELCQKLDKELDDFIDSLEKRRYTEGWPEDRWEEEMD-KHPFFMKSTPENGELSPL 443
EE + +K DK + +F++ + + EE+D HP F + NG + P
Sbjct: 191 EENAFQRRRKWDKRIVEFLNKTSDKPLIWCGDLNVSHEEIDVSHPEFFATAKLNGYVPPN 250
Query: 444 AEGLANLKFDPEE 482
E F P E
Sbjct: 251 KEDCGQPGFTPSE 263
>At3g57330.1 68416.m06381 calcium-transporting ATPase, plasma
membrane-type, putative / Ca2+-ATPase, putative (ACA11)
identical to SP|Q9M2L4|ACAB_ARATH Potential
calcium-transporting ATPase 11, plasma membrane-type (EC
3.6.3.8) (Ca(2+)-ATPase isoform 11) {Arabidopsis
thaliana}; strong similarity to calmodulin-stimulated
calcium-ATPase [Brassica oleracea] GI:1805654
Length = 1025
Score = 27.1 bits (57), Expect = 9.4
Identities = 12/22 (54%), Positives = 13/22 (59%)
Frame = -2
Query: 490 GVFSSGSNLRFARPSASGESSP 425
G+F SG NL S SGES P
Sbjct: 269 GIFISGYNLEIDESSLSGESEP 290
>At3g56800.1 68416.m06317 calmodulin-2/3/5 (CAM3) identical to
calmodulin GI:474183 from [Arabidopsis thaliana]; almost
identical to calmodulin-2/3/5 SP:P25069 [Arabidopsis
thaliana]
Length = 149
Score = 27.1 bits (57), Expect = 9.4
Identities = 15/48 (31%), Positives = 24/48 (50%)
Frame = +3
Query: 249 VKSPMTEEERLELCQKLDKELDDFIDSLEKRRYTEGWPEDRWEEEMDK 392
+K +EEE E + DK+ + FI + E R E +EE+D+
Sbjct: 77 MKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDE 124
>At3g43810.1 68416.m04682 calmodulin-7 (CAM7) almost identical to
calmodulin GI:16227 from [Arabidopsis thaliana],
SP|P59220 Calmodulin-7 {Arabidopsis thaliana}
Length = 149
Score = 27.1 bits (57), Expect = 9.4
Identities = 15/48 (31%), Positives = 24/48 (50%)
Frame = +3
Query: 249 VKSPMTEEERLELCQKLDKELDDFIDSLEKRRYTEGWPEDRWEEEMDK 392
+K +EEE E + DK+ + FI + E R E +EE+D+
Sbjct: 77 MKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDE 124
>At2g41560.1 68415.m05136 calcium-transporting ATPase 4, plasma
membrane-type / Ca2+-ATPase, isoform 4 (ACA4) identical
to SP|O22218 Calcium-transporting ATPase 4, plasma
membrane-type (EC 3.6.3.8) (Ca(2+)-ATPase isoform 4)
{Arabidopsis thaliana}
Length = 1030
Score = 27.1 bits (57), Expect = 9.4
Identities = 12/22 (54%), Positives = 13/22 (59%)
Frame = -2
Query: 490 GVFSSGSNLRFARPSASGESSP 425
G+F SG NL S SGES P
Sbjct: 269 GIFISGYNLEIDESSLSGESEP 290
>At2g41110.1 68415.m05078 calmodulin-2/3/5 (CAM2) (CAL1) almost
identical to Calmodulin-2/3/5 SP:P25069 from
[Arabidopsis thaliana]
Length = 149
Score = 27.1 bits (57), Expect = 9.4
Identities = 15/48 (31%), Positives = 24/48 (50%)
Frame = +3
Query: 249 VKSPMTEEERLELCQKLDKELDDFIDSLEKRRYTEGWPEDRWEEEMDK 392
+K +EEE E + DK+ + FI + E R E +EE+D+
Sbjct: 77 MKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDE 124
>At2g27030.3 68415.m03247 calmodulin-2/3/5 (CAM5) (TCH1) identical
to calmodulin GI:474183 from [Arabidopsis thaliana],
SP|P25069 Calmodulin-2/3/5 {Arabidopsis thaliana}
Length = 181
Score = 27.1 bits (57), Expect = 9.4
Identities = 15/48 (31%), Positives = 24/48 (50%)
Frame = +3
Query: 249 VKSPMTEEERLELCQKLDKELDDFIDSLEKRRYTEGWPEDRWEEEMDK 392
+K +EEE E + DK+ + FI + E R E +EE+D+
Sbjct: 77 MKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDE 124
>At2g27030.2 68415.m03246 calmodulin-2/3/5 (CAM5) (TCH1) identical
to calmodulin GI:474183 from [Arabidopsis thaliana],
SP|P25069 Calmodulin-2/3/5 {Arabidopsis thaliana}
Length = 113
Score = 27.1 bits (57), Expect = 9.4
Identities = 15/48 (31%), Positives = 24/48 (50%)
Frame = +3
Query: 249 VKSPMTEEERLELCQKLDKELDDFIDSLEKRRYTEGWPEDRWEEEMDK 392
+K +EEE E + DK+ + FI + E R E +EE+D+
Sbjct: 41 MKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDE 88
>At2g27030.1 68415.m03245 calmodulin-2/3/5 (CAM5) (TCH1) identical
to calmodulin GI:474183 from [Arabidopsis thaliana],
SP|P25069 Calmodulin-2/3/5 {Arabidopsis thaliana}
Length = 149
Score = 27.1 bits (57), Expect = 9.4
Identities = 15/48 (31%), Positives = 24/48 (50%)
Frame = +3
Query: 249 VKSPMTEEERLELCQKLDKELDDFIDSLEKRRYTEGWPEDRWEEEMDK 392
+K +EEE E + DK+ + FI + E R E +EE+D+
Sbjct: 77 MKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDE 124
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,964,230
Number of Sequences: 28952
Number of extensions: 209754
Number of successful extensions: 597
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 581
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 597
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1171109464
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -