Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP01_F_K17
         (655 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC794.08 |||HEAT repeat protein, unknown biological role|Schiz...    27   3.1  
SPAC57A10.02 |cdr2||GIN4 family protein kinase Cdr2|Schizosaccha...    27   3.1  
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po...    26   4.1  
SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces...    26   5.5  
SPAC16A10.06c |nse2||Smc5-6 complex non-SMC subunit 2 |Schizosac...    25   9.5  

>SPCC794.08 |||HEAT repeat protein, unknown biological
           role|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 798

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 10/36 (27%), Positives = 23/36 (63%)
 Frame = -1

Query: 640 ILEVASLDRLAIVGWLYLYAVNWHLERLSEVETAKS 533
           IL  +++   +++ W ++Y  +WH+ER  +V + +S
Sbjct: 508 ILRKSAITSFSVL-WDFIYETSWHIERWLKVFSVQS 542


>SPAC57A10.02 |cdr2||GIN4 family protein kinase
           Cdr2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 775

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = -1

Query: 421 VLLQHLSVLFLCGADLYPLLWRGASPS 341
           +++QHLS++F C  D  PL  + AS S
Sbjct: 285 LIVQHLSLVFRCSDDPMPLYEKLASQS 311


>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 2812

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +3

Query: 234  ILYNY*YDSDVDILAVFIKSYQDVEH 311
            IL NY Y+ D   L +FIK +Q   H
Sbjct: 939  ILMNYDYERDEVYLMIFIKIFQKCVH 964


>SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 967

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 15/37 (40%), Positives = 21/37 (56%)
 Frame = +3

Query: 357 RHKRG*RSAPQRKRTERC*RSTATGIGHI*PGQSS*H 467
           R  RG  SAP+R++     ++TAT I H    +SS H
Sbjct: 221 RSSRGRSSAPKRRKDSGSSKTTATYIPHNPSKKSSQH 257


>SPAC16A10.06c |nse2||Smc5-6 complex non-SMC subunit 2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 250

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = +2

Query: 191 PVTHHLFATFCRHFY 235
           P+ H + +T C HFY
Sbjct: 185 PIVHPILSTACNHFY 199


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,388,469
Number of Sequences: 5004
Number of extensions: 45070
Number of successful extensions: 131
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)