Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP01_F_K17
         (655 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_20706| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.5  
SB_19972| Best HMM Match : Sod_Fe_N (HMM E-Value=5)                    29   2.5  
SB_9054| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.4  
SB_46726| Best HMM Match : TROVE (HMM E-Value=0)                       28   7.6  
SB_18357| Best HMM Match : Phage_integrase (HMM E-Value=0.0063)        28   7.6  

>SB_20706| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 588

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 13/15 (86%), Positives = 14/15 (93%)
 Frame = +1

Query: 310 MSDRKAELERKKAKL 354
           MSDRKAELERK+ KL
Sbjct: 1   MSDRKAELERKRKKL 15


>SB_19972| Best HMM Match : Sod_Fe_N (HMM E-Value=5)
          Length = 293

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 15/42 (35%), Positives = 25/42 (59%)
 Frame = +2

Query: 401 RKMLKKHCNGHRPHLAWTVVVTLTRCCPRLEWLQLRMSSLLY 526
           R++L  +CNGH  H+  +++  L      L+W   R++SLLY
Sbjct: 178 RRILASYCNGH-THIHTSLLYRLVYTGEVLQWTH-RLTSLLY 217


>SB_9054| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 238

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 13/49 (26%), Positives = 18/49 (36%)
 Frame = +1

Query: 490 GVAPVKDVXXXXXXXXXXXPPQTASPDASLPHTDKASLQLQGGPKKQPQ 636
           GV    ++            P   S D + P T   + Q  GG + QPQ
Sbjct: 42  GVRTATEIERARKSTEVRAEPSENSEDGNFPETSSTNSQATGGTQNQPQ 90


>SB_46726| Best HMM Match : TROVE (HMM E-Value=0)
          Length = 536

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -2

Query: 519 REDILNWSHSKRGQHLVNVTTTVQARCG 436
           R+ I NW  SK+G++L N  T  + R G
Sbjct: 160 RKGIANWYDSKKGKNLANHVTKYKQRNG 187


>SB_18357| Best HMM Match : Phage_integrase (HMM E-Value=0.0063)
          Length = 683

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -2

Query: 588 CMR*TGIWRGCLRWRQRSH 532
           C R    W+GCL WR  +H
Sbjct: 158 CWRFLDNWQGCLSWRDETH 176


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,979,621
Number of Sequences: 59808
Number of extensions: 333497
Number of successful extensions: 770
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 670
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 770
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1669334250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)