Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP01_F_K17
         (655 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81484-9|CAE11297.1|  325|Caenorhabditis elegans Hypothetical pr...    30   1.6  
AC024791-21|AAF60666.1|  749|Caenorhabditis elegans Rnp (rrm rna...    29   3.8  
U64846-8|AAG24109.1|  331|Caenorhabditis elegans Serpentine rece...    27   8.8  
U64846-6|AAG24115.3|  336|Caenorhabditis elegans Serpentine rece...    27   8.8  
AF100661-4|AAC68973.1|  481|Caenorhabditis elegans Hypothetical ...    27   8.8  

>Z81484-9|CAE11297.1|  325|Caenorhabditis elegans Hypothetical
           protein C47A10.10 protein.
          Length = 325

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
 Frame = +3

Query: 108 IKDQLLKNTEFMNLSLRSSFRN*DSLNIPLLIICLPRSVGIFI-LYNY*YDSDVDILAVF 284
           IK  + KNT  M+ S   S      + IPL I+C+P  V +FI +++       +++ + 
Sbjct: 222 IKSMVSKNTFRMHKSFVRSLNF--QVAIPLFIVCIPFMVNVFIPMFSTDLQGTTNLICII 279

Query: 285 IKSYQDV 305
           I S   V
Sbjct: 280 IISMHGV 286


>AC024791-21|AAF60666.1|  749|Caenorhabditis elegans Rnp (rrm rna
           binding domain) containingprotein 6, isoform b protein.
          Length = 749

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 13/30 (43%), Positives = 21/30 (70%)
 Frame = +1

Query: 559 ASPDASLPHTDKASLQLQGGPKKQPQELQV 648
           A+P +SLP TD  +  +   PKK+P+E++V
Sbjct: 349 ATPSSSLP-TDIENKAVISSPKKEPEEIEV 377


>U64846-8|AAG24109.1|  331|Caenorhabditis elegans Serpentine
           receptor, class t protein19 protein.
          Length = 331

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = -2

Query: 60  YKNIVEPIDSVVFYSFLLYL 1
           Y NI+  I ++VFY FL YL
Sbjct: 212 YNNIIMAICTIVFYGFLSYL 231


>U64846-6|AAG24115.3|  336|Caenorhabditis elegans Serpentine
           receptor, class t protein20 protein.
          Length = 336

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = -2

Query: 60  YKNIVEPIDSVVFYSFLLYL 1
           Y NI+  I ++VFY FL YL
Sbjct: 212 YNNIIMAICTIVFYGFLSYL 231


>AF100661-4|AAC68973.1|  481|Caenorhabditis elegans Hypothetical
           protein H20E11.1a protein.
          Length = 481

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -3

Query: 110 YLSVIPDNCRINFNKSNT 57
           Y S+I +NC +NFN S T
Sbjct: 329 YFSIIVENCDVNFNFSTT 346


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,331,069
Number of Sequences: 27780
Number of extensions: 255576
Number of successful extensions: 662
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 638
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 662
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1455289764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)