Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP01_F_K17
         (655 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g12280.1 68414.m01420 disease resistance protein (CC-NBS-LRR ...    29   2.7  
At1g30090.1 68414.m03678 kelch repeat-containing F-box family pr...    28   6.2  

>At1g12280.1 68414.m01420 disease resistance protein (CC-NBS-LRR
           class), putative domain signature CC-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 894

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 14/32 (43%), Positives = 21/32 (65%)
 Frame = +3

Query: 117 QLLKNTEFMNLSLRSSFRN*DSLNIPLLIICL 212
           QLL++ E +N+S++SS      LN P L+ CL
Sbjct: 656 QLLEHLEVLNISIKSSLVVEKLLNAPRLVKCL 687


>At1g30090.1 68414.m03678 kelch repeat-containing F-box family
           protein similar to SP|O95198 Kelch-like protein 2
           (Actin-binding protein Mayven) {Homo sapiens}; contains
           Pfam profiles PF01344: Kelch motif, PF00646: F-box
           domain
          Length = 398

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = +2

Query: 449 WTVVVTLTRCCPRLEWLQLRMSSLLYHQ 532
           W  VV  +RC  +++W  L + +L +H+
Sbjct: 107 WLFVVGFSRCTGKIQWKVLDLRNLTWHE 134


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,390,143
Number of Sequences: 28952
Number of extensions: 230919
Number of successful extensions: 570
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 550
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 566
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1363910256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)