Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP01_F_K13
(506 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC13G1.07 |||palmitoyltransferase|Schizosaccharomyces pombe|ch... 30 0.23
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi... 28 0.70
SPCC1682.16 |rpt4||19S proteasome regulatory subunit Rpt4|Schizo... 28 0.92
SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces pom... 27 2.1
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 26 3.7
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 26 3.7
SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces... 25 6.5
SPAC16E8.07c |vph1||V-type ATPase subunit a|Schizosaccharomyces ... 25 8.6
SPAC23G3.06 |||U3 snoRNP protein Nop58 |Schizosaccharomyces pomb... 25 8.6
SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy... 25 8.6
SPAC11E3.12 |||conserved eukaryotic protein|Schizosaccharomyces ... 25 8.6
SPAC1F3.03 |||Lgl family protein|Schizosaccharomyces pombe|chr 1... 25 8.6
>SPBC13G1.07 |||palmitoyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 356
Score = 29.9 bits (64), Expect = 0.23
Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
Frame = -1
Query: 323 LSVTASSATPGYLSIGHFANNSP--LVLSS-NFMTNSFPFDTNLMRPVHCGSCKFQSAA 156
+SV S P Y+S+ A ++P + L + N + FP+D + P C +CKF+ A
Sbjct: 112 ISVLTSVLLP-YISLYIAAKSNPGKIDLKNWNEASRRFPYDYKIFFPNKCSTCKFEKPA 169
>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 3071
Score = 28.3 bits (60), Expect = 0.70
Identities = 15/58 (25%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Frame = -1
Query: 254 LVLSSNFMTNSFPFD-TNLMRPVHCGSCKFQSAALYPLLDVLGGILKTNTSFFTKITL 84
L +N+ T ++ F T + PV C+ + L+DV + ++SF+T L
Sbjct: 1269 LTYDANYTTGAYVFKATGDLDPVILNMCQSHHVIFWDLIDVATTFARVDSSFYTSENL 1326
>SPCC1682.16 |rpt4||19S proteasome regulatory subunit
Rpt4|Schizosaccharomyces pombe|chr 3|||Manual
Length = 388
Score = 27.9 bits (59), Expect = 0.92
Identities = 15/56 (26%), Positives = 30/56 (53%)
Frame = +1
Query: 172 LQEPQWTGRMRLVSKGNELVMKLEDKTSGELFAKCPIDKYPGVALEAVTDSSRYFV 339
LQ +W +++ + GN ++K DKT ++ + + + G L+ + DS R+ V
Sbjct: 16 LQHREWDSKLKDLRFGNRDLVKKYDKTEDDIKSLQSVGQIIGEVLKQL-DSERFIV 70
>SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1562
Score = 26.6 bits (56), Expect = 2.1
Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Frame = -1
Query: 296 PGYLSIGH--FANNSPLVLSSNFMTNSFPFDTNLMRPVH 186
P +L H F +PL SNF++N F DT ++ H
Sbjct: 170 PEFLKSRHKEFTIPNPLQFISNFLSNLFSRDTRYLKSSH 208
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 25.8 bits (54), Expect = 3.7
Identities = 22/99 (22%), Positives = 41/99 (41%), Gaps = 2/99 (2%)
Frame = +1
Query: 52 HYFL*TMDTYESVILVKNEVF--VFKIPPRTSNRGYRAADWNLQEPQWTGRMRLVSKGNE 225
H+ + YE+ + NE+ + I R W L+ ++ R + G
Sbjct: 847 HWSKSAIKKYETKASIFNELLFCLVYISAGQPARAQEMVYWTLRNGKYKTRELYLMFGRL 906
Query: 226 LVMKLEDKTSGELFAKCPIDKYPGVALEAVTDSSRYFVV 342
++ DKT FA+ PI ++ L + + RY+V+
Sbjct: 907 MIYSRYDKTRNMKFAEKPIPRFLSEPLSIL--ALRYYVL 943
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 25.8 bits (54), Expect = 3.7
Identities = 22/99 (22%), Positives = 41/99 (41%), Gaps = 2/99 (2%)
Frame = +1
Query: 52 HYFL*TMDTYESVILVKNEVF--VFKIPPRTSNRGYRAADWNLQEPQWTGRMRLVSKGNE 225
H+ + YE+ + NE+ + I R W L+ ++ R + G
Sbjct: 847 HWSKSAIKKYETKASIFNELLFCLVYISAGQPARAQEMVYWTLRNGKYKTRELYLMFGRL 906
Query: 226 LVMKLEDKTSGELFAKCPIDKYPGVALEAVTDSSRYFVV 342
++ DKT FA+ PI ++ L + + RY+V+
Sbjct: 907 MIYSRYDKTRNMKFAEKPIPRFLSEPLSIL--ALRYYVL 943
>SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1485
Score = 25.0 bits (52), Expect = 6.5
Identities = 19/63 (30%), Positives = 24/63 (38%), Gaps = 4/63 (6%)
Frame = +1
Query: 295 GVALEAVTDSSRYFVVKIQDDNGRA----AYIGLGFGDRSDSFDLXVALQDHFKWLKKEQ 462
G ++A Y K ++NGR Y GLG D D L H K+ Q
Sbjct: 625 GNQVQAFYTLPEYEYWKEANNNGRGWKIKYYKGLGTSDHDDMKSYFSDLDRHMKYFHAMQ 684
Query: 463 ESD 471
E D
Sbjct: 685 EKD 687
>SPAC16E8.07c |vph1||V-type ATPase subunit a|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 805
Score = 24.6 bits (51), Expect = 8.6
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = +3
Query: 15 ILFYGRYCGIPLTLFFINNGYL*KCYFSEERSI 113
++FYGRY + + LF + G++ FS+ SI
Sbjct: 446 MVFYGRYIVLLMGLFSMYVGFVYNDLFSKPMSI 478
>SPAC23G3.06 |||U3 snoRNP protein Nop58 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 508
Score = 24.6 bits (51), Expect = 8.6
Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 5/47 (10%)
Frame = +1
Query: 202 RLVSKGNELVMKLEDKTSGELFAKCP-----IDKYPGVALEAVTDSS 327
++ SK + L+ L D S L P I+K PG+ E ++DSS
Sbjct: 66 KVSSKLSSLLEGLSDSKSSTLVVADPKLGNAINKLPGLEFEIISDSS 112
>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2052
Score = 24.6 bits (51), Expect = 8.6
Identities = 16/64 (25%), Positives = 29/64 (45%)
Frame = -2
Query: 499 QDPIVPVVFDRSLVLFSTI*NGLEVQHXDQTNQIYHQIQDRYMQHDHYHLVFSQQNNVSY 320
Q +V +F R L S + NG H + D +++ L+F +Q+N+ Y
Sbjct: 1671 QKLLVCKIFYRHSQLKSMLRNGRMSDHDQIQPFLLSNTFDDFVKISSLMLIFGKQDNILY 1730
Query: 319 QLQL 308
++L
Sbjct: 1731 YVKL 1734
>SPAC11E3.12 |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 162
Score = 24.6 bits (51), Expect = 8.6
Identities = 17/40 (42%), Positives = 23/40 (57%), Gaps = 3/40 (7%)
Frame = -1
Query: 173 KFQSAALYPLLDVL---GGILKTNTSFFTKITLS*VSIVY 63
+FQSAAL PLLD+ G T+ + +L+ VSI Y
Sbjct: 25 RFQSAALVPLLDLAQRQHGTWIPPTAMYEIASLAGVSIDY 64
>SPAC1F3.03 |||Lgl family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1004
Score = 24.6 bits (51), Expect = 8.6
Identities = 13/47 (27%), Positives = 23/47 (48%)
Frame = -2
Query: 409 TNQIYHQIQDRYMQHDHYHLVFSQQNNVSYQLQLPVQLLDIYLLGTS 269
T ++++QI+D + HY +F + Y +L + L I G S
Sbjct: 446 TKKVWNQIEDTISVNSHYSCLFGGSPSPGYLKKLDERNLLITSTGLS 492
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,263,647
Number of Sequences: 5004
Number of extensions: 46885
Number of successful extensions: 124
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 202220600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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