Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP01_F_K13
         (506 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    22   4.2  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    21   5.6  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    21   9.7  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    21   9.7  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    21   9.7  

>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 21.8 bits (44), Expect = 4.2
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -1

Query: 407 ESDLSPNPRPIYAARPLSS 351
           E++ SP+P P  A+ P SS
Sbjct: 506 ETNSSPSPNPRIASAPSSS 524


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 21.4 bits (43), Expect = 5.6
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = +1

Query: 259 ELFAKCPIDKYPGVALE 309
           +++A CP D YP +  E
Sbjct: 229 KMYACCPNDTYPMIVYE 245


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 20.6 bits (41), Expect = 9.7
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = -3

Query: 201 HATCPLWLLQVPI 163
           + TC +WL  VPI
Sbjct: 713 YTTCIIWLAFVPI 725


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 20.6 bits (41), Expect = 9.7
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = -1

Query: 287 LSIGHFANNSPLVLSSNFMTNSFPFDTN 204
           L++    N  PL  SSN   NS   +TN
Sbjct: 521 LAVAKQQNQVPLTSSSNVNNNSGNGNTN 548


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 20.6 bits (41), Expect = 9.7
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = -3

Query: 201 HATCPLWLLQVPI 163
           + TC +WL  VPI
Sbjct: 803 YTTCIIWLAFVPI 815


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 154,943
Number of Sequences: 438
Number of extensions: 3311
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13986774
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)