Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP01_F_K12
         (668 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa...    29   0.46 
SPCC736.07c |||cell polarity protein |Schizosaccharomyces pombe|...    28   1.1  
SPAC8E11.08c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual       28   1.1  
SPAC11D3.08c |||amino acid permease, unknown 1|Schizosaccharomyc...    27   2.4  
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    27   3.2  
SPAC4G9.09c |arg11||N-acetyl-gamma-glutamyl-phosphate reductase/...    26   4.3  
SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces ...    26   4.3  
SPAC227.14 |||nicotinamide riboside kinase|Schizosaccharomyces p...    25   7.5  
SPBC1289.12 |usp109||U1 snRNP-associated protein Usp109|Schizosa...    25   7.5  
SPBC887.10 |mcs4||two-component response regulator |Schizosaccha...    25   9.9  
SPAC2E1P3.01 |||zinc binding dehydrogenase|Schizosaccharomyces p...    25   9.9  
SPCC5E4.05c |||serine hydrolase |Schizosaccharomyces pombe|chr 3...    25   9.9  

>SPCC584.04 |sup35|erf3|translation release factor eRF3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 662

 Score = 29.5 bits (63), Expect = 0.46
 Identities = 11/12 (91%), Positives = 12/12 (100%)
 Frame = +3

Query: 630 KEHVNVVFIGHV 665
           KEHVN+VFIGHV
Sbjct: 236 KEHVNIVFIGHV 247


>SPCC736.07c |||cell polarity protein |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 699

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 13/41 (31%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
 Frame = +3

Query: 528 LDTQVGNT--NPNEDGELTKKIPKKKPPRVEDTRSXKEHVN 644
           L+ +  NT  NP E+ + T +   K PP+ + + + KE++N
Sbjct: 564 LNNRAANTKLNPKEEDKSTVESELKAPPKEKSSETSKEYLN 604


>SPAC8E11.08c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 100

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 12/16 (75%), Positives = 12/16 (75%)
 Frame = -2

Query: 79  NNLVFFPG*LKLFRFC 32
           NNLVFF G   LFRFC
Sbjct: 85  NNLVFFMGKCDLFRFC 100


>SPAC11D3.08c |||amino acid permease, unknown 1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 550

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = -2

Query: 610 TRGGFFFGIFFVNSPSSLGFVFPTC 536
           T GG +F IF + SPSS  F+   C
Sbjct: 109 TSGGLYFWIFTLASPSSRAFLCWVC 133


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 21/65 (32%), Positives = 34/65 (52%)
 Frame = +3

Query: 90  SATIMSNNGAPDSWENEAEIIGEKGAKDSNDVSSKISTLNVNAMEFVPSFSKPSQASDST 269
           S+TI S++ +  S  + +  I    +  S+  SS  STL+ ++M    SFS    +S ST
Sbjct: 287 SSTISSSSSSSSSPTSTSSTI----SSSSSSSSSFSSTLSSSSMSSSSSFSSSPTSSSST 342

Query: 270 DSPTS 284
            S +S
Sbjct: 343 ISSSS 347


>SPAC4G9.09c |arg11||N-acetyl-gamma-glutamyl-phosphate
           reductase/acetylglutamate kinase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 885

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
 Frame = +3

Query: 162 GAKDSNDVSSKISTLNVNAMEFVPSFS-KPSQASDSTDSPTSPQ 290
           G KD N +S  I +    A   + + S KP  AS +T++P+S Q
Sbjct: 477 GVKDLNKISKFIQSDKPFADAIIQTQSTKPPTASSTTNNPSSSQ 520


>SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1364

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 16/66 (24%), Positives = 34/66 (51%)
 Frame = -2

Query: 313  FEEPLSDFWGEVGESVLSLA*EGLEKEGTNSMAFTFNVEIFEDTSLESFAPFSPIISASF 134
            +EE L +   E+G +++SL   G++    N+    ++ E+  +   ++F   +  I+  F
Sbjct: 1145 YEEQLLNLKNELGWTIVSLTAGGIKLATNNTALSPYSAEVTVEILRQNF-QVNVDIACKF 1203

Query: 133  SHESGA 116
             +ES A
Sbjct: 1204 PNESNA 1209


>SPAC227.14 |||nicotinamide riboside kinase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 235

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
 Frame = -2

Query: 214 FTFNVEIFED-TSLESFAPFSPIISASFSHESGAPLLDIIVAERKINNLVFFPG 56
           +TF+ ++F     L        + + SF H  G P++D I  E K N ++ F G
Sbjct: 94  WTFDADLFYSLVRLMKKITDRELYAPSFDHAIGDPVVDDICVEPK-NRILIFEG 146


>SPBC1289.12 |usp109||U1 snRNP-associated protein
           Usp109|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 352

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = -2

Query: 169 FAPFSPIISASFSHESGAPLL 107
           F+P +P  + S++H + APLL
Sbjct: 282 FSPINPYYAKSWNHTASAPLL 302


>SPBC887.10 |mcs4||two-component response regulator
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 522

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = +3

Query: 216 AMEFVPSFSKPSQASDSTDSPTS 284
           A E VP   +PS A DS +SP S
Sbjct: 133 ANETVPRIKQPSIALDSLESPVS 155


>SPAC2E1P3.01 |||zinc binding dehydrogenase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 348

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = +3

Query: 174 SNDVSSKISTLNVNAMEFVPSFSKPSQAS 260
           SN    +  TL+VN + FVP    PSQA+
Sbjct: 92  SNAAWREYITLDVNLVYFVPKNITPSQAA 120


>SPCC5E4.05c |||serine hydrolase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 378

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 12/29 (41%), Positives = 14/29 (48%)
 Frame = +3

Query: 399 VEEPPPTTASVPPDVSPTADSWEVEADDA 485
           VE P PT  +  P  SPT    E E+  A
Sbjct: 288 VEHPKPTATTSAPSASPTGVPVEEESHKA 316


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,225,551
Number of Sequences: 5004
Number of extensions: 37983
Number of successful extensions: 136
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 305854096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)