Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP01_F_K12
(668 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_01_0178 - 2548611-2548670,2549816-2549918,2549993-2550096,255... 32 0.48
04_03_0106 + 11325172-11325379,11326590-11326640,11326987-113270... 31 0.83
03_04_0127 - 17508808-17509029,17509195-17509938,17510004-175102... 30 1.5
08_02_0321 - 15761468-15761512,15761573-15761673,15761854-157619... 30 1.9
02_05_0959 + 33086498-33086544,33087295-33087967,33088665-330890... 30 1.9
06_01_0692 - 5047162-5047441,5047602-5047726,5048257-5048327,504... 29 2.5
05_04_0206 + 19034259-19035462,19036870-19037045,19037752-190379... 29 2.5
02_05_0556 - 29940146-29940158,29941060-29941240,29941271-29941670 29 2.5
08_02_1437 - 27096364-27097252,27098931-27099022,27099382-270996... 29 3.3
10_07_0138 + 13325418-13325954 29 4.4
01_06_0213 + 27580635-27581105,27581206-27581298,27581376-275815... 28 5.9
>09_01_0178 -
2548611-2548670,2549816-2549918,2549993-2550096,
2550893-2550988,2551418-2551482,2551558-2551591,
2552469-2552540,2552567-2552644,2553416-2553477,
2554267-2554530,2555057-2555246,2555432-2555500,
2555613-2555669,2555746-2555846,2556029-2556146,
2556225-2556272,2556362-2556487,2556960-2557118,
2558119-2558216,2558324-2558416,2559741-2559937,
2560231-2560354,2561121-2561334,2561773-2561830,
2561955-2562433
Length = 1022
Score = 31.9 bits (69), Expect = 0.48
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = +3
Query: 393 PRVEEPPPTTASVPPDVSPTADSWEVE 473
PRVE PPP+ A+ PP + P D + E
Sbjct: 62 PRVEGPPPSPATAPPMLHPREDDEDEE 88
>04_03_0106 +
11325172-11325379,11326590-11326640,11326987-11327073,
11327276-11327373
Length = 147
Score = 31.1 bits (67), Expect = 0.83
Identities = 12/19 (63%), Positives = 15/19 (78%)
Frame = +3
Query: 609 VEDTRSXKEHVNVVFIGHV 665
VE+ + K H+NVVFIGHV
Sbjct: 97 VEEEKETKRHLNVVFIGHV 115
>03_04_0127 -
17508808-17509029,17509195-17509938,17510004-17510242,
17510334-17510436,17510666-17510770,17510838-17510906,
17510998-17511402,17512048-17512156,17512240-17512295
Length = 683
Score = 30.3 bits (65), Expect = 1.5
Identities = 13/25 (52%), Positives = 15/25 (60%)
Frame = +3
Query: 84 LRSATIMSNNGAPDSWENEAEIIGE 158
L I +NN AP SW N +IIGE
Sbjct: 397 LEDRIICTNNSAPLSWYNRTQIIGE 421
>08_02_0321 -
15761468-15761512,15761573-15761673,15761854-15761950,
15762671-15762742,15762838-15762960,15763047-15763129,
15763269-15763410,15763496-15763654
Length = 273
Score = 29.9 bits (64), Expect = 1.9
Identities = 16/38 (42%), Positives = 21/38 (55%)
Frame = -2
Query: 661 CPINTTFTCSFXLRVSSTRGGFFFGIFFVNSPSSLGFV 548
C T+ TC+F L TR G FF ++F + S L FV
Sbjct: 27 CASATSNTCAFSLAEHLTREGMFFDLYF-RTQSYLRFV 63
>02_05_0959 +
33086498-33086544,33087295-33087967,33088665-33089058,
33089140-33089210,33089373-33089497,33089705-33089821,
33094128-33094238,33094321-33094413,33094726-33094984,
33095067-33095189
Length = 670
Score = 29.9 bits (64), Expect = 1.9
Identities = 15/31 (48%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Frame = +3
Query: 159 KGAKDSNDVSSKISTLNVNAMEFVPS-FSKP 248
KG + + S ++TLN NA EFVPS F P
Sbjct: 29 KGGDAGSKLPSTVTTLNPNAAEFVPSTFRSP 59
>06_01_0692 -
5047162-5047441,5047602-5047726,5048257-5048327,
5048453-5048834,5049389-5050126
Length = 531
Score = 29.5 bits (63), Expect = 2.5
Identities = 13/26 (50%), Positives = 18/26 (69%)
Frame = +3
Query: 189 SKISTLNVNAMEFVPSFSKPSQASDS 266
+K++ LN NA EFVPS +PS S +
Sbjct: 19 NKVTALNPNAAEFVPSCIRPSFESSA 44
>05_04_0206 +
19034259-19035462,19036870-19037045,19037752-19037975,
19038133-19038914,19039337-19039494
Length = 847
Score = 29.5 bits (63), Expect = 2.5
Identities = 10/25 (40%), Positives = 13/25 (52%)
Frame = +3
Query: 393 PRVEEPPPTTASVPPDVSPTADSWE 467
P +PPP PPD P D+W+
Sbjct: 213 PVTPQPPPPPPPPPPDSKPGVDTWD 237
>02_05_0556 - 29940146-29940158,29941060-29941240,29941271-29941670
Length = 197
Score = 29.5 bits (63), Expect = 2.5
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +3
Query: 399 VEEPPPTTASVPPDVSPTADSWEVEAD 479
++EPPP A P S TA W ++AD
Sbjct: 5 IDEPPPAPAPPQPKQSTTARRWWMKAD 31
>08_02_1437 -
27096364-27097252,27098931-27099022,27099382-27099654,
27099872-27100819
Length = 733
Score = 29.1 bits (62), Expect = 3.3
Identities = 17/55 (30%), Positives = 27/55 (49%)
Frame = +3
Query: 120 PDSWENEAEIIGEKGAKDSNDVSSKISTLNVNAMEFVPSFSKPSQASDSTDSPTS 284
P N AEI + K ++ +S + ++ E V S +KP+ A + SPTS
Sbjct: 158 PSVKNNGAEIKKPQLTKSNSSLSKQALNSIIDKKEVVSSKTKPTSARSTPSSPTS 212
>10_07_0138 + 13325418-13325954
Length = 178
Score = 28.7 bits (61), Expect = 4.4
Identities = 11/19 (57%), Positives = 11/19 (57%)
Frame = -1
Query: 437 GRDRCSSRWWFFNTWRSRC 381
G RCS RW WRSRC
Sbjct: 83 GARRCSRRWRRSRRWRSRC 101
>01_06_0213 +
27580635-27581105,27581206-27581298,27581376-27581540,
27581640-27581862,27582329-27582429,27582666-27582713,
27583086-27583172,27583745-27583879,27583985-27584140,
27585336-27585545,27585641-27586351,27586429-27586974,
27587872-27588495,27588595-27588699,27590460-27590711,
27590939-27591766
Length = 1584
Score = 28.3 bits (60), Expect = 5.9
Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = +3
Query: 159 KGAKDSNDVSSKISTLNVNAMEFV-PSFSKPSQASDSTDSP 278
K K+ D ++ S L + E PS KPS A+ S+DSP
Sbjct: 692 KREKEKVDALTQSSDLTTSGKEAPKPSLGKPSSANTSSDSP 732
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,105,148
Number of Sequences: 37544
Number of extensions: 273421
Number of successful extensions: 1271
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1264
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1691314196
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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