Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP01_F_K12
         (668 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)           35   0.052
SB_58692| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.49 
SB_9232| Best HMM Match : Coq4 (HMM E-Value=1.8)                       31   0.85 
SB_15859| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.6  
SB_31430| Best HMM Match : Exo70 (HMM E-Value=2)                       29   3.4  
SB_248| Best HMM Match : No HMM Matches (HMM E-Value=.)                29   4.5  
SB_30778| Best HMM Match : fn3 (HMM E-Value=1.99965e-42)               28   6.0  
SB_51776| Best HMM Match : S-antigen (HMM E-Value=0.24)                28   7.9  
SB_13850| Best HMM Match : WD40 (HMM E-Value=3.1e-06)                  28   7.9  

>SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)
          Length = 547

 Score = 35.1 bits (77), Expect = 0.052
 Identities = 19/46 (41%), Positives = 29/46 (63%), Gaps = 1/46 (2%)
 Frame = +3

Query: 117 APDSWENEAEIIGEKGAKDSND-VSSKISTLNVNAMEFVPSFSKPS 251
           APDSW++    I + G  DS   +++  ++LNVNA  FVP+ + PS
Sbjct: 31  APDSWDS----IEDPGPGDSGQSLAADFNSLNVNAKPFVPNVNAPS 72


>SB_58692| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 37

 Score = 31.9 bits (69), Expect = 0.49
 Identities = 13/24 (54%), Positives = 17/24 (70%)
 Frame = +3

Query: 594 KKPPRVEDTRSXKEHVNVVFIGHV 665
           KK   VE+  +  EHVN++FIGHV
Sbjct: 13  KKRVEVEEEGNGLEHVNIIFIGHV 36


>SB_9232| Best HMM Match : Coq4 (HMM E-Value=1.8)
          Length = 1392

 Score = 31.1 bits (67), Expect = 0.85
 Identities = 16/64 (25%), Positives = 27/64 (42%)
 Frame = +3

Query: 447 PTADSWEVEADDALLTXXXXXXXXXXXLDTQVGNTNPNEDGELTKKIPKKKPPRVEDTRS 626
           PT D+W+ E D+                D++ G+++      LTK    K+ P+V    S
Sbjct: 523 PTPDTWKSERDETEKVEHGKNTSTFPGFDSRAGSSSGKLSKPLTKTKAHKQSPKVSKKSS 582

Query: 627 XKEH 638
            + H
Sbjct: 583 KQLH 586


>SB_15859| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 970

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +3

Query: 408 PPPTTASVPPDVSPTADSW 464
           PP  TA+ PP  SP+ D W
Sbjct: 755 PPAATAATPPPSSPSGDEW 773


>SB_31430| Best HMM Match : Exo70 (HMM E-Value=2)
          Length = 853

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -3

Query: 516 PVHCFLQV*VVHHQPQLPSCLQWAR 442
           P  CF    + HHQ  LP C +++R
Sbjct: 336 PTECFFMTFLAHHQAILPCCRRYSR 360


>SB_248| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2656

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 21/70 (30%), Positives = 36/70 (51%), Gaps = 4/70 (5%)
 Frame = +3

Query: 87   RSATIMSNNGAPDSWENEAEIIGEKGAKDSNDVSSKI----STLNVNAMEFVPSFSKPSQ 254
            +S   +S NGAP + ++ AE +    A D  + S+K+      L  N +  VP   +P Q
Sbjct: 2411 KSFVQLSGNGAP-TLKSLAEWLERNRAYDVAEESAKLVLEEGNLPSNLLTRVPKSPRPKQ 2469

Query: 255  ASDSTDSPTS 284
             + S+ +P+S
Sbjct: 2470 TTPSSANPSS 2479


>SB_30778| Best HMM Match : fn3 (HMM E-Value=1.99965e-42)
          Length = 823

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 19/72 (26%), Positives = 32/72 (44%)
 Frame = -2

Query: 337 FKTGLPAEFEEPLSDFWGEVGESVLSLA*EGLEKEGTNSMAFTFNVEIFEDTSLESFAPF 158
           FKT   A  E P +     V ++ + LA E + KEG N +   + ++ F+    E  A +
Sbjct: 97  FKTAEDAPSEPPANVTVKAVSKNSIVLAWEPIPKEGRNGIVDGYKIKYFKTKEGEDTAKY 156

Query: 157 SPIISASFSHES 122
             +   S S  +
Sbjct: 157 VDVKEPSRSRRA 168


>SB_51776| Best HMM Match : S-antigen (HMM E-Value=0.24)
          Length = 1669

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 17/46 (36%), Positives = 22/46 (47%)
 Frame = +3

Query: 156  EKGAKDSNDVSSKISTLNVNAMEFVPSFSKPSQASDSTDSPTSPQK 293
            +K  K S  VS K ST+N +      S S  S+A     S T P+K
Sbjct: 1046 DKKDKSSIGVSDKASTVNEDPEGAGKSHSSESEAESKRSSKTRPKK 1091


>SB_13850| Best HMM Match : WD40 (HMM E-Value=3.1e-06)
          Length = 229

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = -2

Query: 205 NVEIFEDTSLESFAPFSPIISASFSHESGAPL 110
           N E   DT++E++  FS + S+ F H  G P+
Sbjct: 40  NQEPVSDTNVETWKSFSGVRSSKFRHIIGVPM 71


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,994,324
Number of Sequences: 59808
Number of extensions: 296270
Number of successful extensions: 1032
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 905
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1028
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1729817375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)