Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP01_F_K12
         (668 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    23   2.6  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          23   2.6  
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    23   2.6  

>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = +3

Query: 630 KEHVNVVFIGHV 665
           K H+N+V IGHV
Sbjct: 5   KIHINIVVIGHV 16


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +1

Query: 484 HYSHLKKTMNRKKKNWIHK*ETQI 555
           HY   K+  + +  NW HK ET I
Sbjct: 175 HYDRYKEEESNENYNWEHK-ETHI 197


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = +3

Query: 630 KEHVNVVFIGHV 665
           K H+N+V IGHV
Sbjct: 5   KIHINIVVIGHV 16


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 156,530
Number of Sequences: 438
Number of extensions: 3099
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20221290
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)