Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP01_F_K11
         (654 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_42216| Best HMM Match : No HMM Matches (HMM E-Value=.)             239   2e-63
SB_39690| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.9  
SB_58044| Best HMM Match : Vitellogenin_N (HMM E-Value=0.022)          29   3.3  
SB_57227| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.4  
SB_42810| Best HMM Match : Beach (HMM E-Value=0)                       28   5.8  
SB_35991| Best HMM Match : Gp-FAR-1 (HMM E-Value=0.88)                 28   5.8  
SB_34580| Best HMM Match : Gp-FAR-1 (HMM E-Value=0.88)                 28   5.8  

>SB_42216| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 745

 Score =  239 bits (584), Expect = 2e-63
 Identities = 112/171 (65%), Positives = 140/171 (81%), Gaps = 1/171 (0%)
 Frame = +1

Query: 145 NKRNISTTSVTA-RKEKDTFGELDVPDDKLYGAQTVRSVMNFPIGGIEERMPYPVIVAFG 321
           N+ ++S     A R E D+FGE++VP +K YGAQT RS  NFPIG   E+MP+PVI AFG
Sbjct: 195 NRASLSLVRAMATRIETDSFGEIEVPSEKYYGAQTARSKHNFPIGDESEKMPFPVIRAFG 254

Query: 322 ILKKAAAKVNIEYGLEKKIADAIMQACDDVISGKLYREGHFPLVIWQTGSGTQSNMNTNE 501
            LKKAAA+VN E+GL+  +AD IM+A D+VISGKL  + HFPLV+WQTGSGTQSNMN NE
Sbjct: 255 YLKKAAAEVNKEFGLDGPVADNIMRAADEVISGKL--KDHFPLVVWQTGSGTQSNMNVNE 312

Query: 502 VIANRAIQILGGKLGSKDPVHPNDHVNKSQSSNDTYPTAMHIAVAMELRDR 654
           VI+NRAI+++GG++GSK PVHPNDHVNKSQSSNDT+PTAMH+A A+E+ +R
Sbjct: 313 VISNRAIELMGGEMGSKKPVHPNDHVNKSQSSNDTFPTAMHVACAIEVHER 363


>SB_39690| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 164

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 20/52 (38%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
 Frame = -3

Query: 646 GAPWPRR-CAWRWGTCRSSSATCSRGRWDAPGPCCPVSRPVFVWRGSQSPRS 494
           G PW +R C WR+G     S +CS      PG    + RP   W  S SP S
Sbjct: 22  GCPWLKRLCDWRFGVGSRGSNSCS------PGDPLVLERPPPRW-SSNSPYS 66


>SB_58044| Best HMM Match : Vitellogenin_N (HMM E-Value=0.022)
          Length = 1671

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
 Frame = +1

Query: 67  MATSIFKFSSSLINTSKNYRCVLRLINKRNISTTSVTARKE--KDTFGELD 213
           +   I KF+  ++N  KN++ +L  I K  IS + +T   E  +   G LD
Sbjct: 728 LINKILKFAKDIVNRLKNWKWLLGKIKKIQISLSKLTIVDEIFRKVLGALD 778


>SB_57227| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 712

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = +1

Query: 325 LKKAAAKVNIEYGLEKKIADAIMQACDDVISGKLYREG 438
           LK    K N ++G++ K  DAI   CD V +  + ++G
Sbjct: 429 LKNKELKANTQHGIQIKTLDAIFIHCDLVSASGVLKQG 466


>SB_42810| Best HMM Match : Beach (HMM E-Value=0)
          Length = 667

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -2

Query: 620 MAVGYVSFELCDLFTWSLGCTGSL 549
           +AVG+V+F +C +  W +G T  L
Sbjct: 266 VAVGFVNFSMCWMNVWCMGLTAHL 289


>SB_35991| Best HMM Match : Gp-FAR-1 (HMM E-Value=0.88)
          Length = 669

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 13/46 (28%), Positives = 23/46 (50%)
 Frame = +1

Query: 460 QTGSGTQSNMNTNEVIANRAIQILGGKLGSKDPVHPNDHVNKSQSS 597
           QTG    +N   N+++ N  +++   + GS+ P HP   +N    S
Sbjct: 397 QTGQRNLTNKLRNKLLMNLHVRLRRWRRGSRAPNHPRPDLNTLDES 442


>SB_34580| Best HMM Match : Gp-FAR-1 (HMM E-Value=0.88)
          Length = 953

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 13/46 (28%), Positives = 23/46 (50%)
 Frame = +1

Query: 460 QTGSGTQSNMNTNEVIANRAIQILGGKLGSKDPVHPNDHVNKSQSS 597
           QTG    +N   N+++ N  +++   + GS+ P HP   +N    S
Sbjct: 597 QTGQRNLTNKLRNKLLMNLHVRLRRWRRGSRAPNHPRPDLNTLDES 642


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,681,181
Number of Sequences: 59808
Number of extensions: 463418
Number of successful extensions: 1329
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1214
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1326
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1669334250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)