Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP01_F_K09
         (655 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc...    46   5e-06
SPBC1198.10c |||asparagine-tRNA ligase Slm5|Schizosaccharomyces ...    29   0.44 
SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|...    28   1.4  
SPAC23H4.04 |||tRNA|Schizosaccharomyces pombe|chr 1|||Manual           27   1.8  
SPBC3D6.07 |gpi3||pig-A|Schizosaccharomyces pombe|chr 2|||Manual       27   2.4  
SPCC965.08c |alr1||alanine racemase Alr1|Schizosaccharomyces pom...    26   5.5  
SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein Rad50|Schizos...    25   7.2  

>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 587

 Score = 46.0 bits (104), Expect = 5e-06
 Identities = 15/40 (37%), Positives = 32/40 (80%)
 Frame = +1

Query: 454 EHPKFNFVGKLLGPKGNTMKQLQEDTLCKMAVLGRGSMRD 573
           ++P+ NF+G L+GP+G+T+K ++  +  K+A+ G+GS+++
Sbjct: 196 DYPEINFIGLLIGPRGHTLKDMEAKSGAKIAIRGKGSVKE 235


>SPBC1198.10c |||asparagine-tRNA ligase Slm5|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 441

 Score = 29.5 bits (63), Expect = 0.44
 Identities = 19/65 (29%), Positives = 34/65 (52%), Gaps = 4/65 (6%)
 Frame = +1

Query: 226 GEEGIKINEKAGEYMRELLSEKIK----LNNSKFPLSMKLIDQEVTKVQASGRITKDSKY 393
           G+  +  N K G    ELL+EKIK    +N+  +P+  K +  E+ +     R+ + +K 
Sbjct: 74  GQLAVSKNAKLGLQQYELLAEKIKIYGQINDDNYPIQKKHLTTEMLRQIPHLRL-RTAKQ 132

Query: 394 VDVFR 408
            ++FR
Sbjct: 133 GEIFR 137


>SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 534

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 10/33 (30%), Positives = 22/33 (66%)
 Frame = +1

Query: 466 FNFVGKLLGPKGNTMKQLQEDTLCKMAVLGRGS 564
           F+    ++GP+G  +K +Q++T  ++ + G+GS
Sbjct: 303 FHLRQAIVGPQGAYVKHIQQETRTRVQIKGQGS 335


>SPAC23H4.04 |||tRNA|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 415

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
 Frame = +2

Query: 356 YRLVVVSPRTQNMWMCSVTNQPKSQLKFLCQLR-NILNSTLWENY*VQKETL 508
           Y   VV+  T    MC  T++ K Q  FLC +R   L  T++  +   KE +
Sbjct: 161 YAKSVVNIETNESHMCIPTDKRKDQTLFLCTIRKEALEKTIFPLHNWTKENV 212


>SPBC3D6.07 |gpi3||pig-A|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 456

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 15/42 (35%), Positives = 23/42 (54%)
 Frame = +1

Query: 454 EHPKFNFVGKLLGPKGNTMKQLQEDTLCKMAVLGRGSMRDRQ 579
           +HPK  FV    GPK   ++Q++E  + +  V   GS+R  Q
Sbjct: 218 QHPKVRFVIAGDGPKSIDLEQMREKYMLQDRVEMLGSVRHDQ 259


>SPCC965.08c |alr1||alanine racemase Alr1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 375

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
 Frame = -3

Query: 575 LSLIEPLPSTAILHSVSSCNCFIVFPFG-PNSFPTKLNLG 459
           L LI+    + I+HS    N FI +PF  P     KL+ G
Sbjct: 96  LKLIDDYNFSIIIHSEDQVNSFIKYPFNRPVEIWLKLDSG 135


>SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein
            Rad50|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1290

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 15/40 (37%), Positives = 20/40 (50%)
 Frame = +1

Query: 508  MKQLQEDTLCKMAVLGRGSMRDRQKEEELRQSLXPKYSHL 627
            M+QL+E    K  +L + S  DR+   E  Q L  KY  L
Sbjct: 1015 MRQLEEAVTQKNYLLSQQSHDDRESFRERMQILKSKYGAL 1054


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,364,599
Number of Sequences: 5004
Number of extensions: 45728
Number of successful extensions: 99
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 99
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)