Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP01_F_K08
(599 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q5UAT5 Cluster: 60S ribosomal protein L6; n=15; Bilater... 303 3e-81
UniRef50_Q9V9W3 Cluster: 60S ribosomal protein L6; n=6; Metazoa|... 160 3e-38
UniRef50_Q02878 Cluster: 60S ribosomal protein L6; n=71; Euteleo... 146 5e-34
UniRef50_Q6B8B0 Cluster: 60S ribosomal protein L6; n=1; Ixodes p... 134 1e-30
UniRef50_A7S4S4 Cluster: Predicted protein; n=5; Eukaryota|Rep: ... 133 3e-30
UniRef50_A7L698 Cluster: 60S ribosomal protein L6; n=1; Artemia ... 110 3e-23
UniRef50_Q5DE99 Cluster: 60S ribosomal protein L6; n=1; Schistos... 100 3e-20
UniRef50_Q7XY83 Cluster: 60S ribosomal protein L6; n=1; Griffith... 99 4e-20
UniRef50_A3F4R4 Cluster: 60S ribosomal protein L6; n=1; Taenia a... 92 8e-18
UniRef50_Q4N3I8 Cluster: 60S ribosomal protein L6e, putative; n=... 87 2e-16
UniRef50_Q1DRV0 Cluster: 60S ribosomal protein L6; n=15; Pezizom... 87 3e-16
UniRef50_Q9C9C6 Cluster: 60S ribosomal protein L6-2; n=11; Eukar... 85 1e-15
UniRef50_Q54D63 Cluster: 60S ribosomal protein L6; n=2; Eukaryot... 81 2e-14
UniRef50_Q5CM54 Cluster: 60S ribosomal protein L6; n=2; Cryptosp... 80 5e-14
UniRef50_Q01IK4 Cluster: 60S ribosomal protein L6; n=17; Eukaryo... 79 1e-13
UniRef50_P47991 Cluster: 60S ribosomal protein L6; n=2; Caenorha... 78 2e-13
UniRef50_Q7SH22 Cluster: 60S ribosomal protein L6; n=2; Sordaria... 76 6e-13
UniRef50_Q4X638 Cluster: 60S ribosomal subunit protein L6e, puta... 73 4e-12
UniRef50_Q02326 Cluster: 60S ribosomal protein L6-A; n=16; Dikar... 73 7e-12
UniRef50_UPI0000DC20AA Cluster: UPI0000DC20AA related cluster; n... 67 3e-10
UniRef50_A0CYT3 Cluster: 60S ribosomal protein L6; n=5; Oligohym... 66 5e-10
UniRef50_UPI0000DA1E66 Cluster: PREDICTED: similar to ribosomal ... 64 2e-09
UniRef50_Q4Q4D3 Cluster: 60S ribosomal protein L6, putative; n=1... 62 7e-09
UniRef50_A2EBD1 Cluster: 60S ribosomal protein L6, putative; n=7... 53 6e-06
UniRef50_A5C5P0 Cluster: 60S ribosomal protein L6; n=1; Vitis vi... 51 2e-05
UniRef50_Q8SR91 Cluster: 60S RIBOSOMAL PROTEIN L6; n=1; Encephal... 48 2e-04
UniRef50_Q8U2L5 Cluster: 50S ribosomal protein L14e; n=5; Archae... 42 0.015
UniRef50_A7QIH5 Cluster: Chromosome chr12 scaffold_103, whole ge... 40 0.034
UniRef50_Q7QVA1 Cluster: 60S ribosomal protein L27; n=1; Giardia... 40 0.045
UniRef50_P54054 Cluster: 50S ribosomal protein L14e; n=8; Euryar... 40 0.059
UniRef50_A0N0S1 Cluster: 60S ribosomal protein L6; n=1; Strongyl... 38 0.14
UniRef50_Q98RL7 Cluster: 60S ribosomal protein L6B; n=1; Guillar... 38 0.24
UniRef50_Q8ZYB4 Cluster: 50S ribosomal protein L14e; n=14; Archa... 38 0.24
UniRef50_Q4QEZ2 Cluster: Putative uncharacterized protein; n=2; ... 35 1.7
UniRef50_Q4ZTN3 Cluster: Sensor protein; n=5; Pseudomonas|Rep: S... 34 2.9
UniRef50_A7ET80 Cluster: Putative uncharacterized protein; n=1; ... 34 2.9
UniRef50_Q5KML3 Cluster: VpsB, putative; n=2; Basidiomycota|Rep:... 33 3.9
UniRef50_A1CF41 Cluster: Translation factor pelota, putative; n=... 33 6.8
UniRef50_UPI000023DB34 Cluster: hypothetical protein FG02414.1; ... 32 9.0
UniRef50_Q483P8 Cluster: Putative membrane protein; n=1; Colwell... 32 9.0
UniRef50_Q0D9G3 Cluster: Os06g0717700 protein; n=1; Oryza sativa... 32 9.0
>UniRef50_Q5UAT5 Cluster: 60S ribosomal protein L6; n=15;
Bilateria|Rep: 60S ribosomal protein L6 - Bombyx mori
(Silk moth)
Length = 273
Score = 303 bits (743), Expect = 3e-81
Identities = 147/161 (91%), Positives = 147/161 (91%)
Frame = +2
Query: 116 RNYDLGNGVMRFSKSKMFHKKAKYKFIGXXXXXXXXXXXLTVVVKQIGGEKNGGTRTVPL 295
RNYDLGNGVMRFSKSKMFHKKAKYKFIG LTVVVKQIGGEKNGGTRTVPL
Sbjct: 30 RNYDLGNGVMRFSKSKMFHKKAKYKFIGKKNPKPEKPKKLTVVVKQIGGEKNGGTRTVPL 89
Query: 296 KRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGILPSG 475
KRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGILPSG
Sbjct: 90 KRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGILPSG 149
Query: 476 LLLVTGPFAFNSCPLRRIPXRYVICTSTXISLGNFKLPKHF 598
LLLVTGPFAFNSCPLRRIP RYVI TST ISLGNFKLPKHF
Sbjct: 150 LLLVTGPFAFNSCPLRRIPQRYVIGTSTRISLGNFKLPKHF 190
>UniRef50_Q9V9W3 Cluster: 60S ribosomal protein L6; n=6;
Metazoa|Rep: 60S ribosomal protein L6 - Drosophila
melanogaster (Fruit fly)
Length = 262
Score = 160 bits (388), Expect = 3e-38
Identities = 81/159 (50%), Positives = 104/159 (65%)
Frame = +2
Query: 119 NYDLGNGVMRFSKSKMFHKKAKYKFIGXXXXXXXXXXXLTVVVKQIGGEKNGGTRTVPLK 298
N L G++R+SK++M+ ++A Y+ VK+IGG KNGG RTV LK
Sbjct: 23 NSYLKGGILRYSKAQMYKRRALYRLKDKKSPVVEKAKVPIKKVKKIGGPKNGGERTVFLK 82
Query: 299 RRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGILPSGL 478
+ K+ YPT+ ++ FS+H R R NL GTV ILLAGRH GKRVVL+ +L SGL
Sbjct: 83 KSKASYPTKTFVKKRPSKANFSEHKRNTRRNLTPGTVLILLAGRHQGKRVVLLKVLASGL 142
Query: 479 LLVTGPFAFNSCPLRRIPXRYVICTSTXISLGNFKLPKH 595
LLVTGPFA NSCPLRR+ RYVI TS+ + LG FK+P+H
Sbjct: 143 LLVTGPFALNSCPLRRVSQRYVIGTSSKVDLGAFKVPEH 181
>UniRef50_Q02878 Cluster: 60S ribosomal protein L6; n=71;
Euteleostomi|Rep: 60S ribosomal protein L6 - Homo
sapiens (Human)
Length = 288
Score = 146 bits (353), Expect = 5e-34
Identities = 76/166 (45%), Positives = 101/166 (60%), Gaps = 6/166 (3%)
Frame = +2
Query: 116 RNYDLGNGVMRFSKSKMFHKKA----KYKFIGXXXXXXXXXXXLTVVVKQIGGEKNGGTR 283
RN L G+ R+S+S M+ +KA KY L V K +GG+KNGGTR
Sbjct: 46 RNPVLVRGIGRYSRSAMYSRKAMYKRKYSAAKSKVEKKKKEKVLATVTKPVGGDKNGGTR 105
Query: 284 TVPLKRRKSFYPTQEKIRA--SSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLV 457
V L++ +YPT++ R S G +PFS+HVR++R ++ GT+ I+L GRH GKRVV +
Sbjct: 106 VVKLRKMPRYYPTEDVPRKLLSHGKKPFSQHVRKLRASITPGTILIILTGRHRGKRVVFL 165
Query: 458 GILPSGLLLVTGPFAFNSCPLRRIPXRYVICTSTXISLGNFKLPKH 595
L SGLLLVTGP N PLRR ++VI TST I + N K+PKH
Sbjct: 166 KQLASGLLLVTGPLVLNRVPLRRTHQKFVIATSTKIDISNVKIPKH 211
>UniRef50_Q6B8B0 Cluster: 60S ribosomal protein L6; n=1; Ixodes
pacificus|Rep: 60S ribosomal protein L6 - Ixodes
pacificus (western blacklegged tick)
Length = 268
Score = 134 bits (325), Expect = 1e-30
Identities = 72/161 (44%), Positives = 96/161 (59%), Gaps = 2/161 (1%)
Frame = +2
Query: 116 RNYDLGNGVMRFSKSKMFHKKAKYKFIGXXXXXXXXXXXLTVVVKQIGGEKNGGTRTVPL 295
+N+ L GV FS+SKMFHK+ +K V VK++ GEKNGG R +PL
Sbjct: 26 KNHKLPGGVWLFSRSKMFHKRGLFKVKHAAPTKEKRKRKKRVTVKRVKGEKNGGKRVLPL 85
Query: 296 KRRKSFYPTQE--KIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGILP 469
K+ + YPT++ + + +S +P S+ +R + GTV ILLAG H GKRVV + L
Sbjct: 86 KKERRSYPTEDSPQHKRTSHMKPSSRTRVALRKRITPGTVLILLAGPHRGKRVVFLKQLK 145
Query: 470 SGLLLVTGPFAFNSCPLRRIPXRYVICTSTXISLGNFKLPK 592
+GLL VTGP+ N CPLRRI YVI TST + L KLP+
Sbjct: 146 TGLLPVTGPYGVNGCPLRRINQIYVIATSTKLDLSKVKLPE 186
>UniRef50_A7S4S4 Cluster: Predicted protein; n=5; Eukaryota|Rep:
Predicted protein - Nematostella vectensis
Length = 244
Score = 133 bits (321), Expect = 3e-30
Identities = 73/160 (45%), Positives = 96/160 (60%)
Frame = +2
Query: 116 RNYDLGNGVMRFSKSKMFHKKAKYKFIGXXXXXXXXXXXLTVVVKQIGGEKNGGTRTVPL 295
RN +L G+ R+S+S ++ K+A YK T K IGG+KNGG R VP+
Sbjct: 11 RNPELAPGISRYSRSAIYKKRALYKRKKTGVKKVVQDEPRTKT-KDIGGDKNGGKRVVPV 69
Query: 296 KRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGILPSG 475
+R +YPT++ +R R + ++R ++ GTV ILLAG H GKRVV + L SG
Sbjct: 70 QRESRYYPTED-VRRRLANRK-KPGMAKLRSSITPGTVLILLAGAHRGKRVVFLKQLNSG 127
Query: 476 LLLVTGPFAFNSCPLRRIPXRYVICTSTXISLGNFKLPKH 595
LLLVTGPF N PLRRIP YVI TST I + + KLP+H
Sbjct: 128 LLLVTGPFKINGVPLRRIPQSYVIATSTHIDVSDVKLPEH 167
>UniRef50_A7L698 Cluster: 60S ribosomal protein L6; n=1; Artemia
franciscana|Rep: 60S ribosomal protein L6 - Artemia
sanfranciscana (Brine shrimp) (Artemia franciscana)
Length = 241
Score = 110 bits (264), Expect = 3e-23
Identities = 56/119 (47%), Positives = 77/119 (64%)
Frame = +2
Query: 239 VVVKQIGGEKNGGTRTVPLKRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCIL 418
V+ K+IGG+KNGGTR V ++ FYP + + +K+ +IR +L+ GT+ IL
Sbjct: 44 VIEKKIGGDKNGGTRLVSTRKPPQFYPINSRQKRFHRRLVNNKNPPKIRKSLQPGTILIL 103
Query: 419 LAGRHAGKRVVLVGILPSGLLLVTGPFAFNSCPLRRIPXRYVICTSTXISLGNFKLPKH 595
LAG + GKRVVL+ L SGLLLV+GP N PLRR+ + VI TST I + N K+P+H
Sbjct: 104 LAGVNRGKRVVLLKALKSGLLLVSGPLKVNRVPLRRVHQKLVIATSTRIDISNVKVPEH 162
>UniRef50_Q5DE99 Cluster: 60S ribosomal protein L6; n=1; Schistosoma
japonicum|Rep: 60S ribosomal protein L6 - Schistosoma
japonicum (Blood fluke)
Length = 238
Score = 100 bits (239), Expect = 3e-20
Identities = 54/105 (51%), Positives = 67/105 (63%), Gaps = 3/105 (2%)
Frame = +2
Query: 290 PLKRRKSFYPTQE---KIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVG 460
P R Y TQ+ K+R + FS HVR+IR +++ GTV ILLAG H GKRV+ +
Sbjct: 55 PKTRFPRSYVTQQGKRKLRLRRA-KCFSNHVRKIRSSIQPGTVLILLAGPHKGKRVIFLK 113
Query: 461 ILPSGLLLVTGPFAFNSCPLRRIPXRYVICTSTXISLGNFKLPKH 595
L SGLLLVTGPF +N PLRR+ YVI TST I + F +PKH
Sbjct: 114 ALKSGLLLVTGPFKYNGVPLRRVNQCYVIATSTRIDISKFDVPKH 158
>UniRef50_Q7XY83 Cluster: 60S ribosomal protein L6; n=1; Griffithsia
japonica|Rep: 60S ribosomal protein L6 - Griffithsia
japonica (Red alga)
Length = 216
Score = 99 bits (238), Expect = 4e-20
Identities = 53/120 (44%), Positives = 71/120 (59%)
Frame = +2
Query: 233 LTVVVKQIGGEKNGGTRTVPLKRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVC 412
+ ++ K IGG KNGG R VP K+ +YP +K + K + +RP++K GT+
Sbjct: 20 IKMIKKPIGGAKNGGYRLVPEKKGPKWYPADDKKTPVPSRKNVHKPTK-LRPSIKSGTIV 78
Query: 413 ILLAGRHAGKRVVLVGILPSGLLLVTGPFAFNSCPLRRIPXRYVICTSTXISLGNFKLPK 592
ILLAG G RVV++ L SG LLVTGP+A N PL R+ RYVI TST I + + K
Sbjct: 79 ILLAGVFRGSRVVVLKQLDSGQLLVTGPYAVNRIPLTRVDQRYVIATSTSIDVSKVDVKK 138
>UniRef50_A3F4R4 Cluster: 60S ribosomal protein L6; n=1; Taenia
asiatica|Rep: 60S ribosomal protein L6 - Taenia asiatica
(Asian tapeworm)
Length = 212
Score = 92.3 bits (219), Expect = 8e-18
Identities = 45/77 (58%), Positives = 53/77 (68%)
Frame = +2
Query: 359 FSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGILPSGLLLVTGPFAFNSCPLRRIPXR 538
F+ H RRIR ++ G V ILLAGRH KRVV + L SGLLLVTGPF +N PLRR+ R
Sbjct: 86 FADHRRRIRKSITPGKVLILLAGRHRAKRVVFLKSLASGLLLVTGPFKYNGVPLRRVNQR 145
Query: 539 YVICTSTXISLGNFKLP 589
YVI T T I + N K+P
Sbjct: 146 YVIATKTRIKIKNIKIP 162
>UniRef50_Q4N3I8 Cluster: 60S ribosomal protein L6e, putative; n=3;
Piroplasmida|Rep: 60S ribosomal protein L6e, putative -
Theileria parva
Length = 212
Score = 87.4 bits (207), Expect = 2e-16
Identities = 48/93 (51%), Positives = 61/93 (65%)
Frame = +2
Query: 287 VPLKRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGIL 466
V L RRK+ K + GR ++ V ++R +LK G V ILL G + GKRVVL+ +L
Sbjct: 12 VKLNRRKTVVTRLGKTKVV--GRKYAS-VPKVRESLKPGAVLILLTGSYKGKRVVLLKVL 68
Query: 467 PSGLLLVTGPFAFNSCPLRRIPXRYVICTSTXI 565
SGLLLVTGPF+FN PLRR+ RYVI TST +
Sbjct: 69 KSGLLLVTGPFSFNGVPLRRVNSRYVIATSTNV 101
>UniRef50_Q1DRV0 Cluster: 60S ribosomal protein L6; n=15;
Pezizomycotina|Rep: 60S ribosomal protein L6 -
Coccidioides immitis
Length = 206
Score = 87.0 bits (206), Expect = 3e-16
Identities = 48/116 (41%), Positives = 70/116 (60%), Gaps = 4/116 (3%)
Frame = +2
Query: 236 TVVVKQIGGEKN--GGTRTVPLKRRKS--FYPTQEKIRASSGGRPFSKHVRRIRPNLKIG 403
T+ K +G K G R +P +K+ +YP ++ + + + H ++RP+L+ G
Sbjct: 4 TLDSKSVGQTKKFGKGERVIPHPSQKAQKWYPADDEPQPKKARK--TAHPTKLRPSLQPG 61
Query: 404 TVCILLAGRHAGKRVVLVGILPSGLLLVTGPFAFNSCPLRRIPXRYVICTSTXISL 571
T+ ILLAGR GKRV+L+ L G+LLVTGPF N PLRR+ RYVI TS+ + L
Sbjct: 62 TILILLAGRFRGKRVILLKHLGQGVLLVTGPFKLNGVPLRRVNARYVIATSSTVDL 117
>UniRef50_Q9C9C6 Cluster: 60S ribosomal protein L6-2; n=11;
Eukaryota|Rep: 60S ribosomal protein L6-2 - Arabidopsis
thaliana (Mouse-ear cress)
Length = 233
Score = 85.0 bits (201), Expect = 1e-15
Identities = 56/159 (35%), Positives = 81/159 (50%)
Frame = +2
Query: 116 RNYDLGNGVMRFSKSKMFHKKAKYKFIGXXXXXXXXXXXLTVVVKQIGGEKNGGTRTVPL 295
RN DL GV ++S+S+M+HK+ + + V P+
Sbjct: 12 RNPDLIRGVGKYSRSQMYHKRGLWAIKAKNGGVFPRHDAKSKV-------------DAPV 58
Query: 296 KRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGILPSG 475
++ FYP ++ ++ R +K + +R ++ GTV I+LAGR GKRVV + L SG
Sbjct: 59 EKPPKFYPAED-VKKPLPNRRTAKPAK-LRASITPGTVLIILAGRFKGKRVVFLKQLASG 116
Query: 476 LLLVTGPFAFNSCPLRRIPXRYVICTSTXISLGNFKLPK 592
LLLVTGPF N PLRR+ YVI TST + + L K
Sbjct: 117 LLLVTGPFKINGVPLRRVNQAYVIGTSTKVDISGVTLDK 155
>UniRef50_Q54D63 Cluster: 60S ribosomal protein L6; n=2;
Eukaryota|Rep: 60S ribosomal protein L6 - Dictyostelium
discoideum AX4
Length = 236
Score = 81.0 bits (191), Expect = 2e-14
Identities = 46/104 (44%), Positives = 62/104 (59%)
Frame = +2
Query: 275 GTRTVPLKRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVL 454
G R + K K +IR+++ + K +R ++ GTV I+LAGR AGKRVV
Sbjct: 54 GKRVIAAKASKFAPSIPAEIRSTAAKKVQQKVA--LRKSITPGTVLIILAGRFAGKRVVA 111
Query: 455 VGILPSGLLLVTGPFAFNSCPLRRIPXRYVICTSTXISLGNFKL 586
+ L SGL+L+TGPF N PLRRI RYVI TST I + + K+
Sbjct: 112 LKQLDSGLILITGPFKVNGVPLRRIDQRYVIATSTKIDVSSVKV 155
>UniRef50_Q5CM54 Cluster: 60S ribosomal protein L6; n=2;
Cryptosporidium|Rep: 60S ribosomal protein L6 -
Cryptosporidium hominis
Length = 184
Score = 79.8 bits (188), Expect = 5e-14
Identities = 39/86 (45%), Positives = 55/86 (63%)
Frame = +2
Query: 335 RASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGILPSGLLLVTGPFAFNSC 514
R S R S ++R +L+ G VCILLAG + GKRVV++ LPSGL++VTGP+A N
Sbjct: 20 RKYSSRRKASVVAPKLRSSLQPGVVCILLAGPYKGKRVVMLKALPSGLVVVTGPYALNGV 79
Query: 515 PLRRIPXRYVICTSTXISLGNFKLPK 592
P+RR+ Y+I TST + + + K
Sbjct: 80 PVRRVNPAYIIATSTKVDVSKADVSK 105
>UniRef50_Q01IK4 Cluster: 60S ribosomal protein L6; n=17;
Eukaryota|Rep: 60S ribosomal protein L6 - Oryza sativa
(Rice)
Length = 222
Score = 78.6 bits (185), Expect = 1e-13
Identities = 44/95 (46%), Positives = 57/95 (60%), Gaps = 1/95 (1%)
Frame = +2
Query: 311 FYPTQE-KIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGILPSGLLLV 487
FYP + K R S +P + ++R ++ GTV ILLAGR GKRVV + L SGLLLV
Sbjct: 53 FYPADDVKPRQPSTRKP---NPTKLRSSITPGTVLILLAGRFMGKRVVFLKQLKSGLLLV 109
Query: 488 TGPFAFNSCPLRRIPXRYVICTSTXISLGNFKLPK 592
TGPF N P+RR+ YVI TST + + + K
Sbjct: 110 TGPFKINGVPIRRVNQPYVIATSTKVDISGVNVEK 144
>UniRef50_P47991 Cluster: 60S ribosomal protein L6; n=2;
Caenorhabditis|Rep: 60S ribosomal protein L6 -
Caenorhabditis elegans
Length = 217
Score = 77.8 bits (183), Expect = 2e-13
Identities = 40/73 (54%), Positives = 49/73 (67%), Gaps = 1/73 (1%)
Frame = +2
Query: 380 IRPNLKIGTVCILLAGRHAGKRVVLVGILP-SGLLLVTGPFAFNSCPLRRIPXRYVICTS 556
+R L GTV I+LAGRH GKRVV + LP SGLLLVTGP N PLRRI +VI TS
Sbjct: 67 LRKTLTPGTVLIVLAGRHKGKRVVFLKQLPQSGLLLVTGPHKINGFPLRRIGQAFVIATS 126
Query: 557 TXISLGNFKLPKH 595
+++ K+P+H
Sbjct: 127 LKVNVSGVKIPEH 139
>UniRef50_Q7SH22 Cluster: 60S ribosomal protein L6; n=2;
Sordariaceae|Rep: 60S ribosomal protein L6 - Neurospora
crassa
Length = 207
Score = 76.2 bits (179), Expect = 6e-13
Identities = 41/75 (54%), Positives = 47/75 (62%), Gaps = 2/75 (2%)
Frame = +2
Query: 353 RPFSKHVRRIRPNLKI--GTVCILLAGRHAGKRVVLVGILPSGLLLVTGPFAFNSCPLRR 526
RP K +R P + GTV ILLAGR GKRVVL+ L G+LLVTGPF N PLRR
Sbjct: 24 RPVRKTIRPWSPRSTLVPGTVLILLAGRFRGKRVVLLKALDQGVLLVTGPFKINGVPLRR 83
Query: 527 IPXRYVICTSTXISL 571
+ RYVI TS + L
Sbjct: 84 VNARYVIATSQKVDL 98
>UniRef50_Q4X638 Cluster: 60S ribosomal subunit protein L6e,
putative; n=5; Plasmodium|Rep: 60S ribosomal subunit
protein L6e, putative - Plasmodium chabaudi
Length = 241
Score = 73.3 bits (172), Expect = 4e-12
Identities = 44/115 (38%), Positives = 64/115 (55%), Gaps = 7/115 (6%)
Frame = +2
Query: 242 VVKQIGGEKNGGTRTVPLKRRKSFYPTQEK--IRASSGGRPFS---KHV--RRIRPNLKI 400
VV G +KN V ++K P + K I GR + K V R++R ++++
Sbjct: 17 VVPATGDKKNALKHYVIKGQKKILTPVRAKKTISKKHYGRKLASKKKFVVQRKMRSSIQV 76
Query: 401 GTVCILLAGRHAGKRVVLVGILPSGLLLVTGPFAFNSCPLRRIPXRYVICTSTXI 565
G V I+L G+H GKR ++ +L SGLL V GP+ N PL+R+ RY+I TST I
Sbjct: 77 GKVAIILTGKHMGKRCIIAKVLKSGLLAVVGPYEVNGVPLKRVDPRYLIVTSTNI 131
>UniRef50_Q02326 Cluster: 60S ribosomal protein L6-A; n=16;
Dikarya|Rep: 60S ribosomal protein L6-A - Saccharomyces
cerevisiae (Baker's yeast)
Length = 176
Score = 72.5 bits (170), Expect = 7e-12
Identities = 40/99 (40%), Positives = 60/99 (60%)
Frame = +2
Query: 296 KRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGILPSG 475
++ +YP+++ + A R ++ +++R +L GTV ILLAGR GKRVV + L
Sbjct: 4 QKAPKWYPSED-VAALKKTRKAARP-QKLRASLVPGTVLILLAGRFRGKRVVYLKHLEDN 61
Query: 476 LLLVTGPFAFNSCPLRRIPXRYVICTSTXISLGNFKLPK 592
LL++GPF N PLRR+ RYVI TST +S+ + K
Sbjct: 62 TLLISGPFKVNGVPLRRVNARYVIATSTKVSVEGVNVEK 100
>UniRef50_UPI0000DC20AA Cluster: UPI0000DC20AA related cluster; n=2;
Rattus norvegicus|Rep: UPI0000DC20AA UniRef100 entry -
Rattus norvegicus
Length = 261
Score = 67.3 bits (157), Expect = 3e-10
Identities = 48/151 (31%), Positives = 74/151 (49%)
Frame = +2
Query: 116 RNYDLGNGVMRFSKSKMFHKKAKYKFIGXXXXXXXXXXXLTVVVKQIGGEKNGGTRTVPL 295
RN L G R+S ++ +K Y + + V+K + G+KNGGT V L
Sbjct: 49 RNPILVRGTGRYSIKALYERK--YSAVKSKCEKKKKEKVVATVIKTVSGDKNGGTGVVKL 106
Query: 296 KRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGILPSG 475
++ K + + + + S P KH + + N TV I++ G+H +RVV + L G
Sbjct: 107 QKMKMYLGSCKAMAKS----PAFKHEKAVC-NSTPETVLIIITGQH--RRVVFLKQLSRG 159
Query: 476 LLLVTGPFAFNSCPLRRIPXRYVICTSTXIS 568
LL+TGP A N L R + V+ TST I+
Sbjct: 160 FLLITGPLALNLVLLYRTHQKSVVITSTTIN 190
>UniRef50_A0CYT3 Cluster: 60S ribosomal protein L6; n=5;
Oligohymenophorea|Rep: 60S ribosomal protein L6 -
Paramecium tetraurelia
Length = 208
Score = 66.5 bits (155), Expect = 5e-10
Identities = 39/80 (48%), Positives = 49/80 (61%)
Frame = +2
Query: 332 IRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGILPSGLLLVTGPFAFNS 511
+R RP + +R+I P G V ILL+GR GKRVV + L SGLLLVTGPF N
Sbjct: 44 VRKRKAPRPAT--LRKIVP----GQVLILLSGRFQGKRVVFLKQLKSGLLLVTGPFKING 97
Query: 512 CPLRRIPXRYVICTSTXISL 571
PL+R+ YVI TST + +
Sbjct: 98 VPLKRVNSAYVIPTSTKVDV 117
>UniRef50_UPI0000DA1E66 Cluster: PREDICTED: similar to ribosomal
protein L6; n=5; Eutheria|Rep: PREDICTED: similar to
ribosomal protein L6 - Rattus norvegicus
Length = 112
Score = 64.5 bits (150), Expect = 2e-09
Identities = 34/64 (53%), Positives = 39/64 (60%)
Frame = +2
Query: 404 TVCILLAGRHAGKRVVLVGILPSGLLLVTGPFAFNSCPLRRIPXRYVICTSTXISLGNFK 583
TV I+L GRH GKRVV + L SGLLLVTGP A N PL R+ VI T T + + K
Sbjct: 13 TVLIILTGRHRGKRVVFLKQLGSGLLLVTGPLALNRVPLCRMHQSVVISTFTKVDICKVK 72
Query: 584 LPKH 595
KH
Sbjct: 73 TSKH 76
>UniRef50_Q4Q4D3 Cluster: 60S ribosomal protein L6, putative; n=11;
Trypanosomatidae|Rep: 60S ribosomal protein L6, putative
- Leishmania major
Length = 195
Score = 62.5 bits (145), Expect = 7e-09
Identities = 29/67 (43%), Positives = 44/67 (65%), Gaps = 1/67 (1%)
Frame = +2
Query: 380 IRPNLKIGTVCILLAGRHAGKRVVLVGILP-SGLLLVTGPFAFNSCPLRRIPXRYVICTS 556
+R + G + I+LAGR G+R V++ LP +G L+V+GP +N P+RRI RYVI TS
Sbjct: 29 LRKSCAPGAIAIILAGRFRGRRAVILKQLPHNGPLVVSGPMKYNGVPIRRIDSRYVIATS 88
Query: 557 TXISLGN 577
T + + +
Sbjct: 89 TTVDISS 95
>UniRef50_A2EBD1 Cluster: 60S ribosomal protein L6, putative; n=7;
Trichomonas vaginalis G3|Rep: 60S ribosomal protein L6,
putative - Trichomonas vaginalis G3
Length = 151
Score = 52.8 bits (121), Expect = 6e-06
Identities = 26/63 (41%), Positives = 38/63 (60%)
Frame = +2
Query: 383 RPNLKIGTVCILLAGRHAGKRVVLVGILPSGLLLVTGPFAFNSCPLRRIPXRYVICTSTX 562
RP+LK+GTV I++ G H GKR V+V +G++ + GP P+ I Y+I TST
Sbjct: 53 RPSLKVGTVVIVVGGEHQGKRAVVVADQGAGIVKIAGPVV----PVNEISQDYLIATSTS 108
Query: 563 ISL 571
I +
Sbjct: 109 IEV 111
>UniRef50_A5C5P0 Cluster: 60S ribosomal protein L6; n=1; Vitis
vinifera|Rep: 60S ribosomal protein L6 - Vitis vinifera
(Grape)
Length = 249
Score = 51.2 bits (117), Expect = 2e-05
Identities = 25/51 (49%), Positives = 31/51 (60%)
Frame = +2
Query: 440 KRVVLVGILPSGLLLVTGPFAFNSCPLRRIPXRYVICTSTXISLGNFKLPK 592
KRVV + L SGLLL+TG F N PLRR+ YVI TST + + + K
Sbjct: 156 KRVVFLKQLSSGLLLITGSFKINGVPLRRVNQAYVIATSTKVDIPKVNVEK 206
>UniRef50_Q8SR91 Cluster: 60S RIBOSOMAL PROTEIN L6; n=1;
Encephalitozoon cuniculi|Rep: 60S RIBOSOMAL PROTEIN L6 -
Encephalitozoon cuniculi
Length = 155
Score = 48.0 bits (109), Expect = 2e-04
Identities = 31/82 (37%), Positives = 44/82 (53%)
Frame = +2
Query: 326 EKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGILPSGLLLVTGPFAF 505
EK +A + +P VRR +L G V ++L G A +RVV + L + L GP +
Sbjct: 10 EKYKARTARKP---RVRRT--DLVKGMVVVVLEGVFASRRVVYLKGLEDNIALCAGPKSI 64
Query: 506 NSCPLRRIPXRYVICTSTXISL 571
N PL RI RY++ TST + L
Sbjct: 65 NGIPLFRIDERYLLATSTVLDL 86
>UniRef50_Q8U2L5 Cluster: 50S ribosomal protein L14e; n=5;
Archaea|Rep: 50S ribosomal protein L14e - Pyrococcus
furiosus
Length = 83
Score = 41.5 bits (93), Expect = 0.015
Identities = 18/53 (33%), Positives = 33/53 (62%)
Frame = +2
Query: 386 PNLKIGTVCILLAGRHAGKRVVLVGILPSGLLLVTGPFAFNSCPLRRIPXRYV 544
P + +G + +++AGR AG++VV+V I+ +LVTG N RR+ +++
Sbjct: 2 PAIDVGRIAVVIAGRRAGQKVVVVDIIDKNFVLVTGA-GLNKVKRRRMNIKHI 53
>UniRef50_A7QIH5 Cluster: Chromosome chr12 scaffold_103, whole
genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr12 scaffold_103, whole genome shotgun
sequence - Vitis vinifera (Grape)
Length = 345
Score = 40.3 bits (90), Expect = 0.034
Identities = 36/125 (28%), Positives = 57/125 (45%), Gaps = 4/125 (3%)
Frame = +2
Query: 155 KSKMFHKK---AKYKFIGXXXXXXXXXXXLTVVVKQIG-GEKNGGTRTVPLKRRKSFYPT 322
++ HKK A+ FI L V+ + G K + ++ FYP
Sbjct: 151 RTSTLHKKIASARLDFIKLSGSENELEALLQVLEPSLAKGNKKKKVLSNTEEKLPRFYPA 210
Query: 323 QEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGILPSGLLLVTGPFA 502
+ ++ + +K ++ +R ++ GTV I+LAGR VV + L SGLLL+TG F
Sbjct: 211 DD-VKKPLINKHKAKPIK-LRASITPGTVLIILAGR-----VVFLKQLSSGLLLITGSFK 263
Query: 503 FNSCP 517
N P
Sbjct: 264 INDVP 268
>UniRef50_Q7QVA1 Cluster: 60S ribosomal protein L27; n=1; Giardia
lamblia ATCC 50803|Rep: 60S ribosomal protein L27 -
Giardia lamblia ATCC 50803
Length = 135
Score = 39.9 bits (89), Expect = 0.045
Identities = 17/29 (58%), Positives = 22/29 (75%)
Frame = +2
Query: 383 RPNLKIGTVCILLAGRHAGKRVVLVGILP 469
+P +K G VCI+L GRHAGK+ V+V LP
Sbjct: 3 QPIIKPGLVCIVLQGRHAGKKAVIVEALP 31
>UniRef50_P54054 Cluster: 50S ribosomal protein L14e; n=8;
Euryarchaeota|Rep: 50S ribosomal protein L14e -
Methanococcus jannaschii
Length = 80
Score = 39.5 bits (88), Expect = 0.059
Identities = 18/48 (37%), Positives = 27/48 (56%)
Frame = +2
Query: 386 PNLKIGTVCILLAGRHAGKRVVLVGILPSGLLLVTGPFAFNSCPLRRI 529
P +++G VCI AGR AGK V+V IL ++V G C ++ +
Sbjct: 2 PAIEVGRVCIKTAGREAGKVCVIVDILDKNFVIVDGLVKRRRCNIKHL 49
>UniRef50_A0N0S1 Cluster: 60S ribosomal protein L6; n=1;
Strongyloides papillosus|Rep: 60S ribosomal protein L6 -
Strongyloides papillosus
Length = 127
Score = 38.3 bits (85), Expect = 0.14
Identities = 16/38 (42%), Positives = 23/38 (60%)
Frame = +2
Query: 476 LLLVTGPFAFNSCPLRRIPXRYVICTSTXISLGNFKLP 589
L GPF+ N P+RRI ++V+ TST I + K+P
Sbjct: 10 LFTFLGPFSINGVPVRRIAQKFVLPTSTKIDVSGVKIP 47
>UniRef50_Q98RL7 Cluster: 60S ribosomal protein L6B; n=1; Guillardia
theta|Rep: 60S ribosomal protein L6B - Guillardia theta
(Cryptomonas phi)
Length = 169
Score = 37.5 bits (83), Expect = 0.24
Identities = 22/69 (31%), Positives = 35/69 (50%)
Frame = +2
Query: 389 NLKIGTVCILLAGRHAGKRVVLVGILPSGLLLVTGPFAFNSCPLRRIPXRYVICTSTXIS 568
+ KIG + I+ + GK+ V +G G LL++G FN +I +YV+ + +
Sbjct: 41 DFKIGDILIIKKRNNYGKKCVFLGHTDDGNLLLSGIMKFNGIGYLKIHWKYVVKSGVSLK 100
Query: 569 LGNFKLPKH 595
NF L KH
Sbjct: 101 GLNF-LTKH 108
>UniRef50_Q8ZYB4 Cluster: 50S ribosomal protein L14e; n=14;
Archaea|Rep: 50S ribosomal protein L14e - Pyrobaculum
aerophilum
Length = 103
Score = 37.5 bits (83), Expect = 0.24
Identities = 17/60 (28%), Positives = 31/60 (51%)
Frame = +2
Query: 392 LKIGTVCILLAGRHAGKRVVLVGILPSGLLLVTGPFAFNSCPLRRIPXRYVICTSTXISL 571
+ IG V + + GR AG++ V+V I+ +++TGP RR+ ++ T I +
Sbjct: 5 IDIGRVVVKVLGREAGRKAVVVDIVDENYVVITGPKPITGVKRRRVNINHIEPTDKKIDI 64
>UniRef50_Q4QEZ2 Cluster: Putative uncharacterized protein; n=2;
Leishmania|Rep: Putative uncharacterized protein -
Leishmania major
Length = 2874
Score = 34.7 bits (76), Expect = 1.7
Identities = 16/37 (43%), Positives = 22/37 (59%)
Frame = -2
Query: 115 GFFRRFFFSHRTCSCGSRLGHRFRLCWSQYSNRVQEK 5
G + FFF C+C R+ R+R C SQ SNRV+ +
Sbjct: 1621 GMYEDFFFGP-LCACTERVCARYRSCTSQLSNRVRSQ 1656
>UniRef50_Q4ZTN3 Cluster: Sensor protein; n=5; Pseudomonas|Rep:
Sensor protein - Pseudomonas syringae pv. syringae
(strain B728a)
Length = 676
Score = 33.9 bits (74), Expect = 2.9
Identities = 19/53 (35%), Positives = 31/53 (58%)
Frame = +2
Query: 350 GRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGILPSGLLLVTGPFAFN 508
GR ++ R++RP LK+ + + G +A V G L +G+ L+T PFAF+
Sbjct: 617 GRQLAEIARQLRPELKV----LFITG-YAEHAAVRGGFLDTGMQLITKPFAFD 664
>UniRef50_A7ET80 Cluster: Putative uncharacterized protein; n=1;
Sclerotinia sclerotiorum 1980|Rep: Putative
uncharacterized protein - Sclerotinia sclerotiorum 1980
Length = 752
Score = 33.9 bits (74), Expect = 2.9
Identities = 18/44 (40%), Positives = 22/44 (50%)
Frame = +2
Query: 266 KNGGTRTVPLKRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLK 397
K R LK SF P + + ASS GRP K +R+R LK
Sbjct: 128 KEDHNREEELKAMVSFMPHRPAVDASSSGRPMKKDSKRMRNGLK 171
>UniRef50_Q5KML3 Cluster: VpsB, putative; n=2; Basidiomycota|Rep:
VpsB, putative - Cryptococcus neoformans (Filobasidiella
neoformans)
Length = 686
Score = 33.5 bits (73), Expect = 3.9
Identities = 16/45 (35%), Positives = 26/45 (57%)
Frame = -3
Query: 465 RIPTSTTLLPACLPARRMQTVPIFRLGRILRTCLLNGRPPDEARI 331
R+P+ L A L A R Q P ++ +++ T + NG PP+ AR+
Sbjct: 397 RVPSPNKLRLAILYALRYQKSPSAQIPQVVSTLISNGVPPERARL 441
>UniRef50_A1CF41 Cluster: Translation factor pelota, putative; n=7;
Pezizomycotina|Rep: Translation factor pelota, putative
- Aspergillus clavatus
Length = 410
Score = 32.7 bits (71), Expect = 6.8
Identities = 15/34 (44%), Positives = 22/34 (64%)
Frame = +3
Query: 282 EQYPSNVGSPSTPLRRKSVPHLVAVHSASMYAGS 383
++Y +V S +TP ++ +P LV VHSAS Y S
Sbjct: 239 QKYIQSVASTTTPALKRLLPSLVVVHSASGYLHS 272
>UniRef50_UPI000023DB34 Cluster: hypothetical protein FG02414.1;
n=1; Gibberella zeae PH-1|Rep: hypothetical protein
FG02414.1 - Gibberella zeae PH-1
Length = 607
Score = 32.3 bits (70), Expect = 9.0
Identities = 24/60 (40%), Positives = 35/60 (58%), Gaps = 2/60 (3%)
Frame = +2
Query: 293 LKRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCI--LLAGRHAGKRVVLVGIL 466
L+ R +F P+Q KI + F++HV R+R NL+I I L+A + GK V+ GIL
Sbjct: 431 LESRDAF-PSQIKIPCKAELASFTRHVERVRKNLEIRVTQIESLIAWLNEGK-VLFDGIL 488
>UniRef50_Q483P8 Cluster: Putative membrane protein; n=1; Colwellia
psychrerythraea 34H|Rep: Putative membrane protein -
Colwellia psychrerythraea (strain 34H / ATCC BAA-681)
(Vibriopsychroerythus)
Length = 249
Score = 32.3 bits (70), Expect = 9.0
Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Frame = -3
Query: 492 PVTKSRPLGRIPTSTTLLPA-CLP-ARRMQTVPIFRLGRILRTCLL 361
P TK G IP + T P+ C P A R+ V ++ +GRI CL+
Sbjct: 41 PTTKESLQGDIPVNVTSAPSGCSPQASRLNLVFLYHVGRIASYCLI 86
>UniRef50_Q0D9G3 Cluster: Os06g0717700 protein; n=1; Oryza sativa
(japonica cultivar-group)|Rep: Os06g0717700 protein -
Oryza sativa subsp. japonica (Rice)
Length = 115
Score = 32.3 bits (70), Expect = 9.0
Identities = 18/58 (31%), Positives = 29/58 (50%)
Frame = +1
Query: 313 LPHSGENPCLIWWPSIQQACTQDPTQPEDRNCLHSPRW*TCRQEGCTCWNSAQRSAFS 486
L H+G++PCLI PS+ T + Q + SP W +C + + ++Q S S
Sbjct: 50 LRHNGQDPCLINQPSMHG--TWNTCQQSGKLLTFSPVWKSCSSKRSQMFQNSQDSVIS 105
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 594,269,679
Number of Sequences: 1657284
Number of extensions: 11764195
Number of successful extensions: 29422
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 28473
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29405
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 42317807226
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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