Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP01_F_K08
         (599 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g74060.1 68414.m08578 60S ribosomal protein L6 (RPL6B) simila...    85   3e-17
At1g74050.1 68414.m08576 60S ribosomal protein L6 (RPL6C) simila...    85   3e-17
At1g18540.1 68414.m02313 60S ribosomal protein L6 (RPL6A) simila...    80   1e-15
At2g29210.1 68415.m03550 splicing factor PWI domain-containing p...    30   1.3  
At1g20540.1 68414.m02559 transducin family protein / WD-40 repea...    29   3.1  
At2g27270.1 68415.m03277 expressed protein                             28   5.4  
At5g65570.1 68418.m08250 pentatricopeptide (PPR) repeat-containi...    27   9.5  

>At1g74060.1 68414.m08578 60S ribosomal protein L6 (RPL6B) similar
           to 60S ribosomal protein L6 (YL 16 like) GB:CAB57309
           from [Cyanophora paradoxa]
          Length = 233

 Score = 85.0 bits (201), Expect = 3e-17
 Identities = 56/159 (35%), Positives = 81/159 (50%)
 Frame = +2

Query: 116 RNYDLGNGVMRFSKSKMFHKKAKYKFIGXXXXXXXXXXXLTVVVKQIGGEKNGGTRTVPL 295
           RN DL  GV ++S+S+M+HK+  +                + V               P+
Sbjct: 12  RNPDLIRGVGKYSRSQMYHKRGLWAIKAKNGGVFPRHDAKSKV-------------DAPV 58

Query: 296 KRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGILPSG 475
           ++   FYP ++ ++     R  +K  + +R ++  GTV I+LAGR  GKRVV +  L SG
Sbjct: 59  EKPPKFYPAED-VKKPLPNRRTAKPAK-LRASITPGTVLIILAGRFKGKRVVFLKQLASG 116

Query: 476 LLLVTGPFAFNSCPLRRIPXRYVICTSTXISLGNFKLPK 592
           LLLVTGPF  N  PLRR+   YVI TST + +    L K
Sbjct: 117 LLLVTGPFKINGVPLRRVNQAYVIGTSTKVDISGVTLDK 155


>At1g74050.1 68414.m08576 60S ribosomal protein L6 (RPL6C) similar
           to 60S ribosomal protein L6 (YL 16 like) GB:CAB57309
           from [Cyanophora paradoxa]
          Length = 233

 Score = 85.0 bits (201), Expect = 3e-17
 Identities = 56/159 (35%), Positives = 81/159 (50%)
 Frame = +2

Query: 116 RNYDLGNGVMRFSKSKMFHKKAKYKFIGXXXXXXXXXXXLTVVVKQIGGEKNGGTRTVPL 295
           RN DL  GV ++S+S+M+HK+  +                + V               P+
Sbjct: 12  RNPDLIRGVGKYSRSQMYHKRGLWAIKAKNGGVFPRHDAKSKV-------------DAPV 58

Query: 296 KRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGILPSG 475
           ++   FYP ++ ++     R  +K  + +R ++  GTV I+LAGR  GKRVV +  L SG
Sbjct: 59  EKPPKFYPAED-VKKPLPNRRTAKPTK-LRASITPGTVLIILAGRFKGKRVVFLKQLASG 116

Query: 476 LLLVTGPFAFNSCPLRRIPXRYVICTSTXISLGNFKLPK 592
           LLLVTGPF  N  PLRR+   YVI TST + +    L K
Sbjct: 117 LLLVTGPFKINGVPLRRVNQAYVIGTSTKVDISGVTLDK 155


>At1g18540.1 68414.m02313 60S ribosomal protein L6 (RPL6A) similar
           to 60S ribosomal protein L6 GI:7208784 from [Cicer
           arietinum]
          Length = 233

 Score = 80.2 bits (189), Expect = 1e-15
 Identities = 55/159 (34%), Positives = 78/159 (49%)
 Frame = +2

Query: 116 RNYDLGNGVMRFSKSKMFHKKAKYKFIGXXXXXXXXXXXLTVVVKQIGGEKNGGTRTVPL 295
           RN DL  GV ++S+S+M+HK+  +                  V               P+
Sbjct: 12  RNPDLIRGVGKYSRSQMYHKRGLWAIKAKNGGVFPRHDAQPKV-------------DAPV 58

Query: 296 KRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGILPSG 475
           ++   FYP ++ ++     R   K  + ++ ++  GTV I+LAGR  GKRVV +  L SG
Sbjct: 59  EKPAKFYPAED-VKKPLVNRRKPKPTK-LKASITPGTVLIILAGRFKGKRVVFLKQLSSG 116

Query: 476 LLLVTGPFAFNSCPLRRIPXRYVICTSTXISLGNFKLPK 592
           LLLVTGPF  N  PLRR+   YVI TST I +      K
Sbjct: 117 LLLVTGPFKINGVPLRRVNQAYVIGTSTKIDISGVNTEK 155


>At2g29210.1 68415.m03550 splicing factor PWI domain-containing
           protein contains Pfam profile PF01480: PWI domain
          Length = 878

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 12/31 (38%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
 Frame = +2

Query: 290 PLKRRKSFYPTQEKIRASSGGRPFS-KHVRR 379
           P++RR+S  P +E++  S GGR  S  H+++
Sbjct: 525 PVRRRRSLTPDEERVSLSQGGRHTSPSHIKQ 555


>At1g20540.1 68414.m02559 transducin family protein / WD-40 repeat
           family protein contains 6 WD-40 repeats (PF00400);
           similar to Rbap46 polypeptide (GI:9454362) [Gallus
           gallus]
          Length = 351

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
 Frame = +1

Query: 256 WR*EEWGNQNSTPQT*EV--LLPHSGENPCLIWWPS 357
           W+  E   Q ++PQ   V  L  H G+  C++WWPS
Sbjct: 96  WQIPELYGQLNSPQLERVASLDAHVGKINCVLWWPS 131


>At2g27270.1 68415.m03277 expressed protein
          Length = 231

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 21/73 (28%), Positives = 36/73 (49%), Gaps = 1/73 (1%)
 Frame = +2

Query: 317 PTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGILPSGLLLVTGP 496
           PT++K  A   G   SKH R +  +    + C+       GK ++  G+  + +LL+   
Sbjct: 21  PTKKKTEAKEEGAAASKHSRVVYSD---KSRCL----SKNGKTIIYFGVPAALILLIICV 73

Query: 497 FAFNSCPLR-RIP 532
           FAFN   ++ R+P
Sbjct: 74  FAFNYIAIQPRVP 86


>At5g65570.1 68418.m08250 pentatricopeptide (PPR) repeat-containing
           protein contains INTERPRO:IPR002885 PPR repeats
          Length = 738

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 14/25 (56%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
 Frame = -2

Query: 112 FFRRF-FFSHRTCSCGSRLGHRFRL 41
           F R F FFS RTCS  S + ++FRL
Sbjct: 30  FSRYFSFFSSRTCSPESSINNQFRL 54


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,933,866
Number of Sequences: 28952
Number of extensions: 265843
Number of successful extensions: 599
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 587
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 599
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1187288784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)