Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP01_F_K07
         (472 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC15F9.03c |nxt2|nft2, ntf2, ntf2, nft2, SPAC1B9.01c|nuclear t...    81   6e-17
SPBP8B7.11 |nxt3||ubiquitin protease cofactor |Schizosaccharomyc...    54   1e-08
SPCC16C4.04 |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    26   3.3  
SPCC970.02 |||mannan endo-1,6-alpha-mannosidase|Schizosaccharomy...    25   4.4  

>SPAC15F9.03c |nxt2|nft2, ntf2, ntf2, nft2, SPAC1B9.01c|nuclear
           transport factor Nxt2 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 123

 Score = 81.4 bits (192), Expect = 6e-17
 Identities = 48/120 (40%), Positives = 69/120 (57%), Gaps = 2/120 (1%)
 Frame = +2

Query: 119 YDAIGKGFVQQYYTLFDDPAQRANLVNMYNVETSFMTFEGVQLQGAVKIMEKLNSLTFQK 298
           Y+A+   F Q YY  FD  + R+ L ++Y  E S ++FEG QLQG   I+EKL SL FQ+
Sbjct: 4   YNALATQFTQFYYQTFD--SDRSQLSSLYR-EESMLSFEGAQLQGTKAIVEKLVSLPFQR 60

Query: 299 ITRIVTAVDSQPM-FDGGVLINVLGRLKCDEXP-PHLYMQTFVLKPLGXSFYVQHDIFRL 472
           +   ++ +D+QP    G V++ V G L  DE      Y Q F L     ++YV +D+FRL
Sbjct: 61  VQHRISTLDAQPTGTTGSVIVMVTGELLLDEEQMAQRYSQVFHLVNNNGNYYVLNDLFRL 120


>SPBP8B7.11 |nxt3||ubiquitin protease cofactor |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 434

 Score = 53.6 bits (123), Expect = 1e-08
 Identities = 37/120 (30%), Positives = 58/120 (48%), Gaps = 4/120 (3%)
 Frame = +2

Query: 122 DAIGKGFVQQYYTLFDDPAQRANLVNMYNVETSFM---TFEGVQL-QGAVKIMEKLNSLT 289
           D IG  FVQ+YYT  +    R +    Y  +++ +     E + L  G  +I  K+  L 
Sbjct: 16  DEIGWMFVQEYYTYLNKEPNRLHC--FYTKKSTLIHGDEGESISLCHGQQEIHNKILDLD 73

Query: 290 FQKITRIVTAVDSQPMFDGGVLINVLGRLKCDEXPPHLYMQTFVLKPLGXSFYVQHDIFR 469
           FQ    +++ VDS    +GG++I VLG +         + QTF L      ++V +DIFR
Sbjct: 74  FQNCKVLISNVDSLASSNGGIVIQVLGEMSNKGKLSRKFAQTFFLAEQPNGYFVLNDIFR 133


>SPCC16C4.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 266

 Score = 25.8 bits (54), Expect = 3.3
 Identities = 10/22 (45%), Positives = 17/22 (77%)
 Frame = -3

Query: 101 FRLRCVYLSHQQKAQFQPEKFK 36
           FRL+  Y+SH +K+ F P+++K
Sbjct: 235 FRLK-KYISHSKKSAFSPQRWK 255


>SPCC970.02 |||mannan endo-1,6-alpha-mannosidase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 442

 Score = 25.4 bits (53), Expect = 4.4
 Identities = 15/54 (27%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
 Frame = +2

Query: 137 GFVQQYYTLFDDPAQRANLVNMYNVETSFMTFE-GVQLQGAVKIMEKLNSLTFQ 295
           GF+Q+ YT+FD  + +    N  ++E +  T+  G+ + GA  +    NS  ++
Sbjct: 219 GFIQEDYTVFDGSSIKD---NCSSIEITQWTYNIGLYMAGAAYMYNYTNSTVWK 269


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,967,423
Number of Sequences: 5004
Number of extensions: 37915
Number of successful extensions: 75
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 72
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 180421690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)