Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP01_F_K06
         (538 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g02830.1 68414.m00243 60S ribosomal protein L22 (RPL22A) simi...    52   2e-07
At3g05560.2 68416.m00614 60S ribosomal protein L22-2 (RPL22B) id...    51   6e-07
At3g05560.1 68416.m00613 60S ribosomal protein L22-2 (RPL22B) id...    51   6e-07
At5g27770.1 68418.m03330 60S ribosomal protein L22 (RPL22C) ribo...    50   1e-06
At3g56700.1 68416.m06307 male sterility protein, putative simila...    28   3.4  
At3g60970.1 68416.m06823 ABC transporter family protein ABC tran...    27   6.0  

>At1g02830.1 68414.m00243 60S ribosomal protein L22 (RPL22A) similar
           to ribosomal protein L22 GI:710294 from [Rattus
           norvegicus]
          Length = 127

 Score = 52.4 bits (120), Expect = 2e-07
 Identities = 23/69 (33%), Positives = 37/69 (53%)
 Frame = +3

Query: 171 LKFTIDCTHPAEDSILDVGNFEKYLKEHVKVEGKTNNLSNHVVVARX*DESRYHRRHSFF 350
           + F IDC+ P +D+IL++   EK+L+E +KV GK   L N V + R   +   +   +F 
Sbjct: 18  VSFVIDCSKPVDDTILEIATLEKFLQERIKVRGKAGALGNSVSITRYNGKINVNANSNFS 77

Query: 351 KEVPEVFNK 377
           K   +   K
Sbjct: 78  KRYLKYLTK 86



 Score = 27.5 bits (58), Expect = 6.0
 Identities = 20/69 (28%), Positives = 28/69 (40%), Gaps = 2/69 (2%)
 Frame = +1

Query: 259 KLRAKQIT*AITLSSPGXKTKVAITADIPFSXXXXXXXXXXXXXXXXXXDWLRVVASAHD 438
           K+R K      ++S      K+ + A+  FS                  DWLRV+AS  D
Sbjct: 47  KVRGKAGALGNSVSITRYNGKINVNANSNFSKRYLKYLTKKYLKKYNLRDWLRVIASNKD 106

Query: 439 --AXELRYF 459
               E+RYF
Sbjct: 107 KNVYEVRYF 115


>At3g05560.2 68416.m00614 60S ribosomal protein L22-2 (RPL22B)
           identical to 60S ribosomal protein L22-2 SP:Q9M9W1 from
           [Arabidopsis thaliana]
          Length = 124

 Score = 50.8 bits (116), Expect = 6e-07
 Identities = 19/46 (41%), Positives = 31/46 (67%)
 Frame = +3

Query: 171 LKFTIDCTHPAEDSILDVGNFEKYLKEHVKVEGKTNNLSNHVVVAR 308
           + FTIDC+ P +D I+++ + EK+L+E +KV GK   L + V + R
Sbjct: 16  VSFTIDCSKPVDDKIMEIASLEKFLQERIKVGGKAGALGDSVTITR 61



 Score = 33.1 bits (72), Expect = 0.12
 Identities = 19/51 (37%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
 Frame = +1

Query: 313 KTKVAITADIPFSXXXXXXXXXXXXXXXXXXDWLRVVASAHD--AXELRYF 459
           K+K+ +TAD  FS                  DWLRV+A+  D    ELRYF
Sbjct: 63  KSKITVTADGQFSKRYLKYLTKKYLKKHNVRDWLRVIAANKDRNLYELRYF 113


>At3g05560.1 68416.m00613 60S ribosomal protein L22-2 (RPL22B)
           identical to 60S ribosomal protein L22-2 SP:Q9M9W1 from
           [Arabidopsis thaliana]
          Length = 124

 Score = 50.8 bits (116), Expect = 6e-07
 Identities = 19/46 (41%), Positives = 31/46 (67%)
 Frame = +3

Query: 171 LKFTIDCTHPAEDSILDVGNFEKYLKEHVKVEGKTNNLSNHVVVAR 308
           + FTIDC+ P +D I+++ + EK+L+E +KV GK   L + V + R
Sbjct: 16  VSFTIDCSKPVDDKIMEIASLEKFLQERIKVGGKAGALGDSVTITR 61



 Score = 33.1 bits (72), Expect = 0.12
 Identities = 19/51 (37%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
 Frame = +1

Query: 313 KTKVAITADIPFSXXXXXXXXXXXXXXXXXXDWLRVVASAHD--AXELRYF 459
           K+K+ +TAD  FS                  DWLRV+A+  D    ELRYF
Sbjct: 63  KSKITVTADGQFSKRYLKYLTKKYLKKHNVRDWLRVIAANKDRNLYELRYF 113


>At5g27770.1 68418.m03330 60S ribosomal protein L22 (RPL22C)
           ribosomal protein L22 (cytosolic), Rattus norvegicus,
           PIR:S52084
          Length = 124

 Score = 50.0 bits (114), Expect = 1e-06
 Identities = 19/46 (41%), Positives = 31/46 (67%)
 Frame = +3

Query: 171 LKFTIDCTHPAEDSILDVGNFEKYLKEHVKVEGKTNNLSNHVVVAR 308
           + FTIDC+ P +D I+++ + EK+L+E +KV GK   L + V + R
Sbjct: 16  VSFTIDCSKPVDDKIMEIASLEKFLQERIKVGGKAGALGDSVSITR 61



 Score = 33.1 bits (72), Expect = 0.12
 Identities = 19/51 (37%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
 Frame = +1

Query: 313 KTKVAITADIPFSXXXXXXXXXXXXXXXXXXDWLRVVASAHD--AXELRYF 459
           K+K+ +TAD  FS                  DWLRV+A+  D    ELRYF
Sbjct: 63  KSKITVTADGQFSKRYLKYLTKKYLKKHNVRDWLRVIAANKDRNLYELRYF 113


>At3g56700.1 68416.m06307 male sterility protein, putative similar
           to SP|Q08891 Male sterility protein 2 {Arabidopsis
           thaliana}; contains Pfam profile PF03015: Male sterility
           protein
          Length = 527

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 12/37 (32%), Positives = 24/37 (64%)
 Frame = +3

Query: 189 CTHPAEDSILDVGNFEKYLKEHVKVEGKTNNLSNHVV 299
           C  P E++++D+    +++K H  +EG T+ LSN ++
Sbjct: 402 CDFPLEETVIDL----EHMKIHSSLEGFTSALSNTII 434


>At3g60970.1 68416.m06823 ABC transporter family protein ABC
           transporter-like proteins
          Length = 1037

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = -1

Query: 274 VLPSTLTCSFKYFSKLPTSKILSSAGCVQSIVNFKLIFRL 155
           +L S       YF   PT +IL+ A   QS+++ ++  +L
Sbjct: 560 MLCSIFRAPMSYFDSTPTGRILNRASTDQSVLDLEMAVKL 599


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,233,450
Number of Sequences: 28952
Number of extensions: 147379
Number of successful extensions: 352
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 344
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 352
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 993966856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)