Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP01_F_K04
(598 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAP7G5.05 |rpl1002|rpl10-2, rpl10|60S ribosomal protein L10|Sch... 146 2e-36
SPBC18E5.04 |rpl1001|rpl10-1, rpl10|60S ribosomal protein L10|Sc... 146 2e-36
SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyc... 29 0.39
SPAC19D5.03 |cid1||poly|Schizosaccharomyces pombe|chr 1|||Manual 29 0.52
SPCC1827.04 |||ankyrin repeat protein, unknown biological role|S... 27 1.6
SPBC1105.03c |mrpl16||mitochondrial ribosomal protein subunit L1... 27 1.6
SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2 |Schiz... 26 3.6
SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 26 4.8
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 26 4.8
SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|... 25 6.3
SPAC3A12.05c |taf2||TATA-binding protein associated factor Taf2|... 25 6.3
>SPAP7G5.05 |rpl1002|rpl10-2, rpl10|60S ribosomal protein
L10|Schizosaccharomyces pombe|chr 1|||Manual
Length = 221
Score = 146 bits (355), Expect = 2e-36
Identities = 69/105 (65%), Positives = 79/105 (75%), Gaps = 2/105 (1%)
Frame = +1
Query: 52 MGRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQL 231
M RRPARCYRYCKNKPYPKSR+ R VPD KIRIFDLG+KRA VD+FPLC+HLVS+EYEQ+
Sbjct: 1 MARRPARCYRYCKNKPYPKSRYNRAVPDSKIRIFDLGRKRAGVDEFPLCIHLVSNEYEQI 60
Query: 232 SSEALEAGRICCNKYLXKELRKGSVPYPHETSPF--PRLSASIKC 360
+SEALEA RIC NKYL K K S PF R++ + C
Sbjct: 61 TSEALEAARICANKYLVKIGGKDSFHLRVRAHPFHVVRINKMLSC 105
Score = 131 bits (317), Expect = 7e-32
Identities = 60/85 (70%), Positives = 71/85 (83%)
Frame = +3
Query: 342 IRINKMLSCAGADRLQTGMRGAFGKPQGTVARVRIGQPIMSVRSSDRWKAQVIEALRRAK 521
+RINKMLSCAGADRLQTGMR AFGKP G VARV IGQ +MSVR+ D +A IEALRR +
Sbjct: 97 VRINKMLSCAGADRLQTGMRHAFGKPNGLVARVNIGQVLMSVRTKDSSRATAIEALRRCQ 156
Query: 522 FKFPGRQKIYVSXKWGFTKYERDEF 596
+KFPG+Q+I VS KWGF++Y RDE+
Sbjct: 157 YKFPGQQRIIVSKKWGFSQYARDEY 181
>SPBC18E5.04 |rpl1001|rpl10-1, rpl10|60S ribosomal protein
L10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 221
Score = 146 bits (355), Expect = 2e-36
Identities = 69/105 (65%), Positives = 79/105 (75%), Gaps = 2/105 (1%)
Frame = +1
Query: 52 MGRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQL 231
M RRPARCYRYCKNKPYPKSR+ R VPD KIRIFDLG+KRA VD+FPLC+HLVS+EYEQ+
Sbjct: 1 MARRPARCYRYCKNKPYPKSRYNRAVPDSKIRIFDLGRKRAGVDEFPLCIHLVSNEYEQI 60
Query: 232 SSEALEAGRICCNKYLXKELRKGSVPYPHETSPF--PRLSASIKC 360
+SEALEA RIC NKYL K K S PF R++ + C
Sbjct: 61 TSEALEAARICANKYLVKIGGKDSFHLRVRAHPFHVVRINKMLSC 105
Score = 131 bits (316), Expect = 9e-32
Identities = 60/85 (70%), Positives = 71/85 (83%)
Frame = +3
Query: 342 IRINKMLSCAGADRLQTGMRGAFGKPQGTVARVRIGQPIMSVRSSDRWKAQVIEALRRAK 521
+RINKMLSCAGADRLQTGMR AFGKP G VARV IGQ +MSVR+ D +A IEALRR +
Sbjct: 97 VRINKMLSCAGADRLQTGMRHAFGKPNGLVARVNIGQILMSVRTKDSSRATAIEALRRCQ 156
Query: 522 FKFPGRQKIYVSXKWGFTKYERDEF 596
+KFPG+Q+I VS KWGF++Y RDE+
Sbjct: 157 YKFPGQQRIIVSKKWGFSQYARDEY 181
>SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 781
Score = 29.5 bits (63), Expect = 0.39
Identities = 15/49 (30%), Positives = 27/49 (55%)
Frame = +1
Query: 277 LXKELRKGSVPYPHETSPFPRLSASIKCYHALELIGSRLGCVVRLASLR 423
+ ++L+ G +P P+ PRLSA K + +GS V+R+ +L+
Sbjct: 419 IPRKLKSGFIP-PYAKRVVPRLSAKYKLVDETKDMGSGATAVIRIVTLK 466
>SPAC19D5.03 |cid1||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 405
Score = 29.1 bits (62), Expect = 0.52
Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Frame = +1
Query: 76 YRYCKNKPYPKSRFCRGVPDP-KIRIFDLGKKRATVDDFPLCVHLVSDEYEQLSSEALEA 252
Y+ N ++FC V + KI + +KRA +D LC+ +S + E ++ +LE+
Sbjct: 34 YQKVPNSHKEFTKFCYEVYNEIKISDKEFKEKRAALDTLRLCLKRISPDAELVAFGSLES 93
Query: 253 G 255
G
Sbjct: 94 G 94
>SPCC1827.04 |||ankyrin repeat protein, unknown biological
role|Schizosaccharomyces pombe|chr 3|||Manual
Length = 600
Score = 27.5 bits (58), Expect = 1.6
Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Frame = +1
Query: 133 DPKIRIFDLGKKRATVDDFPLCV-HLVSDEYEQLSSEALEA 252
DPK+R+F KRAT + C LV+ + + S +++A
Sbjct: 320 DPKLRVFPFTTKRATHSELLRCYKELVTPKISHVDSISIKA 360
>SPBC1105.03c |mrpl16||mitochondrial ribosomal protein subunit
L16|Schizosaccharomyces pombe|chr 2|||Manual
Length = 215
Score = 27.5 bits (58), Expect = 1.6
Identities = 16/56 (28%), Positives = 26/56 (46%)
Frame = +3
Query: 387 QTGMRGAFGKPQGTVARVRIGQPIMSVRSSDRWKAQVIEALRRAKFKFPGRQKIYV 554
+T M G + AR+ IG+ + + K AL++A F PG+ +I V
Sbjct: 124 ETRMGKGKGAFEYWAARIPIGRVLFEIGGDGMRKELAEHALKQAAFHLPGKYEIIV 179
>SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 527
Score = 26.2 bits (55), Expect = 3.6
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = +2
Query: 167 RERPLTTFHCACTWCPTNMNS 229
R RP +T H +CT+C + S
Sbjct: 459 RSRPDSTSHASCTYCVARLRS 479
>SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1038
Score = 25.8 bits (54), Expect = 4.8
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = -3
Query: 428 STLRLAKRTTHPSLEPISSS 369
+T +LAKR T PSL P S+
Sbjct: 957 TTTKLAKRITQPSLSPARST 976
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 25.8 bits (54), Expect = 4.8
Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 5/53 (9%)
Frame = +1
Query: 154 DLGKKRATVDDFPLCVHLVSDEYEQL---SSEALEAGRICCN--KYLXKELRK 297
++ KKRA DD + +VS EYE L SS+ ++ N KY+ K ++K
Sbjct: 1033 EIEKKRAENDDLQSKLSVVSSEYENLLLISSQTNKSLEDKTNQLKYIEKNVQK 1085
>SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1234
Score = 25.4 bits (53), Expect = 6.3
Identities = 11/39 (28%), Positives = 21/39 (53%)
Frame = -2
Query: 252 CLQSL*AQLFIFVGHQVHAQWKVVNGRSLLTQIEDTDLG 136
CL L L + H++ ++W+ +N R LL + + + G
Sbjct: 940 CLLPLLPALLSELDHKLVSEWRRINDRGLLVEEDAEETG 978
>SPAC3A12.05c |taf2||TATA-binding protein associated factor
Taf2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1174
Score = 25.4 bits (53), Expect = 6.3
Identities = 8/15 (53%), Positives = 13/15 (86%)
Frame = +2
Query: 119 VGVYLIPRSVSSIWV 163
+GVYLIP++ S +W+
Sbjct: 394 IGVYLIPKAWSDLWL 408
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,710,902
Number of Sequences: 5004
Number of extensions: 58426
Number of successful extensions: 193
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 184
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 191
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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