Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP01_F_K04
(598 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g66580.1 68414.m07565 60S ribosomal protein L10 (RPL10C) cont... 138 3e-33
At1g14320.1 68414.m01697 60S ribosomal protein L10 (RPL10A) / Wi... 138 3e-33
At1g26910.1 68414.m03281 60S ribosomal protein L10 (RPL10B) Near... 138 3e-33
At3g54230.1 68416.m05994 zinc finger protein-related / D111/G-pa... 27 7.2
At3g11710.1 68416.m01435 lysyl-tRNA synthetase, putative / lysin... 27 7.2
At5g03670.1 68418.m00326 expressed protein 27 9.5
At2g30040.1 68415.m03653 protein kinase family protein contains ... 27 9.5
At1g53180.1 68414.m06027 expressed protein 27 9.5
>At1g66580.1 68414.m07565 60S ribosomal protein L10 (RPL10C)
contains Pfam profile: PF00826: Ribosomal L10
Length = 221
Score = 138 bits (334), Expect = 3e-33
Identities = 75/143 (52%), Positives = 88/143 (61%), Gaps = 9/143 (6%)
Frame = +1
Query: 52 MGRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQL 231
MGRRPARCYR K KPYPKSR+CRGVPDPKIRI+D+G KR VD+FP CVHLVS E E +
Sbjct: 1 MGRRPARCYRQIKGKPYPKSRYCRGVPDPKIRIYDVGMKRKGVDEFPFCVHLVSWEKENV 60
Query: 232 SSEALEAGRICCNKYLXKELRKGSVPYPHETSPFP--RLSASIKCYHALEL-------IG 384
SSEALEA RI CNKY+ K K + PF R++ + C A L G
Sbjct: 61 SSEALEAARIACNKYMVKSAGKDAFHLRIRVHPFHVLRINKMLSCAGADRLQTGMRGAFG 120
Query: 385 SRLGCVVRLASLRVL*HVFALDS 453
LG R+A +VL V D+
Sbjct: 121 KALGTCARVAIGQVLLSVRCKDN 143
Score = 129 bits (312), Expect = 1e-30
Identities = 62/85 (72%), Positives = 67/85 (78%)
Frame = +3
Query: 342 IRINKMLSCAGADRLQTGMRGAFGKPQGTVARVRIGQPIMSVRSSDRWKAQVIEALRRAK 521
+RINKMLSCAGADRLQTGMRGAFGK GT ARV IGQ ++SVR D EALRRAK
Sbjct: 97 LRINKMLSCAGADRLQTGMRGAFGKALGTCARVAIGQVLLSVRCKDNHGVHAQEALRRAK 156
Query: 522 FKFPGRQKIYVSXKWGFTKYERDEF 596
FKFPGRQKI VS KWGFTK+ R E+
Sbjct: 157 FKFPGRQKIIVSRKWGFTKFNRAEY 181
>At1g14320.1 68414.m01697 60S ribosomal protein L10 (RPL10A) /
Wilm's tumor suppressor protein-related similar to tumor
suppressor GI:575354 from [Oryza sativa]
Length = 220
Score = 138 bits (334), Expect = 3e-33
Identities = 75/143 (52%), Positives = 88/143 (61%), Gaps = 9/143 (6%)
Frame = +1
Query: 52 MGRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQL 231
MGRRPARCYR K KPYPKSR+CRGVPDPKIRI+D+G KR VD+FP CVHLVS E E +
Sbjct: 1 MGRRPARCYRQIKGKPYPKSRYCRGVPDPKIRIYDVGMKRKGVDEFPFCVHLVSWEKENV 60
Query: 232 SSEALEAGRICCNKYLXKELRKGSVPYPHETSPFP--RLSASIKCYHALEL-------IG 384
SSEALEA RI CNKY+ K K + PF R++ + C A L G
Sbjct: 61 SSEALEAARIACNKYMVKSAGKDAFHLRIRVHPFHVLRINKMLSCAGADRLQTGMRGAFG 120
Query: 385 SRLGCVVRLASLRVL*HVFALDS 453
LG R+A +VL V D+
Sbjct: 121 KALGTCARVAIGQVLLSVRCKDA 143
Score = 128 bits (309), Expect = 3e-30
Identities = 62/85 (72%), Positives = 67/85 (78%)
Frame = +3
Query: 342 IRINKMLSCAGADRLQTGMRGAFGKPQGTVARVRIGQPIMSVRSSDRWKAQVIEALRRAK 521
+RINKMLSCAGADRLQTGMRGAFGK GT ARV IGQ ++SVR D EALRRAK
Sbjct: 97 LRINKMLSCAGADRLQTGMRGAFGKALGTCARVAIGQVLLSVRCKDAHGHHAQEALRRAK 156
Query: 522 FKFPGRQKIYVSXKWGFTKYERDEF 596
FKFPGRQKI VS KWGFTK+ R +F
Sbjct: 157 FKFPGRQKIIVSRKWGFTKFNRADF 181
>At1g26910.1 68414.m03281 60S ribosomal protein L10 (RPL10B) Nearly
identical to ribosomal protein L10.e, Wilm's tumor
suppressor homologue, gi|17682 (Z15157), however
differences in sequence indicate this is a different
member of the L10 family
Length = 221
Score = 138 bits (333), Expect = 3e-33
Identities = 75/143 (52%), Positives = 88/143 (61%), Gaps = 9/143 (6%)
Frame = +1
Query: 52 MGRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQL 231
MGRRPARCYR K KPYPKSR+CRGVPDPKIRI+D+G KR VD+FP CVHLVS E E +
Sbjct: 1 MGRRPARCYRQIKGKPYPKSRYCRGVPDPKIRIYDVGMKRKGVDEFPYCVHLVSWEKENV 60
Query: 232 SSEALEAGRICCNKYLXKELRKGSVPYPHETSPFP--RLSASIKCYHALEL-------IG 384
SSEALEA RI CNKY+ K K + PF R++ + C A L G
Sbjct: 61 SSEALEAARIACNKYMVKSAGKDAFHLRIRVHPFHVLRINKMLSCAGADRLQTGMRGAFG 120
Query: 385 SRLGCVVRLASLRVL*HVFALDS 453
LG R+A +VL V D+
Sbjct: 121 KALGTCARVAIGQVLLSVRCKDA 143
Score = 127 bits (306), Expect = 6e-30
Identities = 61/85 (71%), Positives = 67/85 (78%)
Frame = +3
Query: 342 IRINKMLSCAGADRLQTGMRGAFGKPQGTVARVRIGQPIMSVRSSDRWKAQVIEALRRAK 521
+RINKMLSCAGADRLQTGMRGAFGK GT ARV IGQ ++SVR D EALRRAK
Sbjct: 97 LRINKMLSCAGADRLQTGMRGAFGKALGTCARVAIGQVLLSVRCKDAHGHHAQEALRRAK 156
Query: 522 FKFPGRQKIYVSXKWGFTKYERDEF 596
FKFPGRQKI VS KWGFTK+ R ++
Sbjct: 157 FKFPGRQKIIVSRKWGFTKFNRADY 181
>At3g54230.1 68416.m05994 zinc finger protein-related / D111/G-patch
domain-containing protein / RNA recognition motif
(RRM)-containing protein KIAA0122 gene , Homo sapiens,
EMBL:HSDKG02; contains Pfam profiles PF00076: RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF01585: G-patch domain, weak hit to PF00641: Zn-finger
in Ran binding protein and others
Length = 1105
Score = 27.5 bits (58), Expect = 7.2
Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Frame = -1
Query: 160 PNRRYG-SWDQVHPDRTSISDTVYFCSTGSISLAGAP 53
PN R+G S+D +PD + D VY G +L P
Sbjct: 53 PNHRFGVSYDDGYPDERLMRDDVYNYPPGHNTLGDLP 89
>At3g11710.1 68416.m01435 lysyl-tRNA synthetase, putative /
lysine--tRNA ligase, putative similar to SP|Q43776
Lysyl-tRNA synthetase (EC 6.1.1.6) (Lysine--tRNA ligase)
{Lycopersicon esculentum}; contains Pfam profile
PF00152: tRNA synthetases class II (D, K and N)
Length = 626
Score = 27.5 bits (58), Expect = 7.2
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = +1
Query: 271 KYLXKELRKGSVPYPHETSPFPRLSASIKCYHAL 372
KYL E KG PYPH+ + + I+ Y +L
Sbjct: 96 KYLAAEKAKGENPYPHKFAVSMSIPKYIETYGSL 129
>At5g03670.1 68418.m00326 expressed protein
Length = 516
Score = 27.1 bits (57), Expect = 9.5
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +2
Query: 236 QRLWRQDVSAAISTSXKNCGKDQFHIRM 319
+R W D +ISTS ++ G D+F + M
Sbjct: 217 ERSWDVDFETSISTSSRSNGSDEFAMMM 244
>At2g30040.1 68415.m03653 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 463
Score = 27.1 bits (57), Expect = 9.5
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = -2
Query: 444 CEHVLQYPEACQTHHAS 394
C+ +LQ+P CQ HH S
Sbjct: 261 CDQLLQHPFLCQDHHDS 277
>At1g53180.1 68414.m06027 expressed protein
Length = 358
Score = 27.1 bits (57), Expect = 9.5
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = +1
Query: 61 RPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGK 165
R +R RYC + PYP S P+ K+ D+GK
Sbjct: 27 RRSRGLRYCHSDPYPSSSSTSTSPE-KMGDSDIGK 60
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,565,133
Number of Sequences: 28952
Number of extensions: 325643
Number of successful extensions: 967
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 937
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 964
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1190791976
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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