Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP01_F_K03
         (648 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6F12.14 |cut23|apc8|anaphase-promoting complex subunit Apc8 ...    71   2e-13
SPBC6B1.09c |nbs1||Mre11 complex subunit Nbs1|Schizosaccharomyce...    25   7.1  

>SPAC6F12.14 |cut23|apc8|anaphase-promoting complex subunit Apc8
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 565

 Score = 70.5 bits (165), Expect = 2e-13
 Identities = 33/59 (55%), Positives = 43/59 (72%), Gaps = 1/59 (1%)
 Frame = +1

Query: 394 EEKDAYTLAKCYFDCQEYDRAAHFLENCTSSKCVFLHKYSLYMSSEKK-RLDNATDLGT 567
           EEK+ Y LAK YFDC+E++RAA+ L+NC SSK +FL  YS Y++ EKK   +N T L T
Sbjct: 86  EEKNIYLLAKSYFDCKEFERAAYTLQNCKSSKSIFLRLYSKYLAGEKKSEEENETLLNT 144



 Score = 33.1 bits (72), Expect = 0.035
 Identities = 14/33 (42%), Positives = 21/33 (63%)
 Frame = +3

Query: 222 QIDLTQVRIDILQGIRECNSRGLVQTTKWLAEL 320
           Q  L ++R  +L+ I EC+ RGLV   +W AE+
Sbjct: 17  QEQLREIRNCLLKCISECSERGLVYAVRWAAEM 49


>SPBC6B1.09c |nbs1||Mre11 complex subunit Nbs1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 613

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +1

Query: 385 ITPEEKDAYTLAKCYFDCQEYD 450
           +TP EKD +T   C F+ ++ D
Sbjct: 53  LTPSEKDYFTGGPCEFEVKDLD 74


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,508,842
Number of Sequences: 5004
Number of extensions: 47357
Number of successful extensions: 98
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 98
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)