Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP01_F_K03
         (648 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_1131 + 27872870-27872958,27873036-27873281,27874058-278741...    29   2.4  
01_06_0261 + 27978341-27978391,27978539-27978683,27978794-279788...    29   3.2  
01_06_1488 + 37716986-37717076,37717424-37717558,37717755-377178...    28   5.6  
09_02_0546 - 10454404-10455687                                         27   9.7  

>06_03_1131 +
           27872870-27872958,27873036-27873281,27874058-27874163,
           27874665-27875209,27875455-27875914,27876234-27876319,
           27877092-27877194
          Length = 544

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 16/60 (26%), Positives = 25/60 (41%)
 Frame = +3

Query: 243 RIDILQGIRECNSRGLVQTTKWLAELNYALRDHKITSEEPSXISERGHNAGGKGCLHISK 422
           R+++    R+   RGL    KW AEL   + D   T    S +     +  G   LH+ +
Sbjct: 9   RVELRAAARQLGERGLYSAAKWAAELLVGI-DPDATPAPSSAMDTPSSSGSGGHLLHLHR 67


>01_06_0261 +
           27978341-27978391,27978539-27978683,27978794-27978861,
           27979630-27980073,27980163-27980681,27981002-27981214,
           27981650-27981805,27982753-27982941
          Length = 594

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 26/90 (28%), Positives = 39/90 (43%), Gaps = 7/90 (7%)
 Frame = +1

Query: 382 DITPE----EKDAYTLAKCYFDCQEYDRAAHFLENCTSSKCVFLH-KYSLYMSSEK--KR 540
           D+TP      +DAY L        +YD+A  F+    S   +    KY+++ S+    KR
Sbjct: 327 DVTPSPVAMSRDAYNLPDFV---TKYDQALFFVIKSYSEDDIHKSIKYNVWASTPNGNKR 383

Query: 541 LDNATDLGTENSESXQVLLDLLSFFXTNSN 630
           LDNA  L  E          +  FF  N++
Sbjct: 384 LDNAFKLAQERVAEKGTKCPMFLFFSVNAS 413


>01_06_1488 +
           37716986-37717076,37717424-37717558,37717755-37717831,
           37717934-37718181,37718503-37718559,37718665-37718800,
           37718944-37719001,37719110-37719195,37719270-37719326,
           37719537-37719557,37720553-37720954,37721500-37721647,
           37721940-37722036,37724065-37724202,37724496-37724598,
           37724792-37724828,37724905-37725014,37725141-37725164
          Length = 674

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +2

Query: 2   VLCIGSCTPLIESLKPTVFIY 64
           V C+GSCT  IE+L   + IY
Sbjct: 51  VTCVGSCTSPIENLMVVIMIY 71


>09_02_0546 - 10454404-10455687
          Length = 427

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = -3

Query: 460 GQLYRILDSRSSTLLMCRHPFPPALCPRSEI 368
           G++  +  S +ST + C    PP  CP S I
Sbjct: 207 GEIGHVASSCASTCVHCEEDHPPDRCPTSRI 237


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,330,043
Number of Sequences: 37544
Number of extensions: 272791
Number of successful extensions: 555
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 547
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 555
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1608522592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)