Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP01_F_K03
         (648 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_57135| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.1  
SB_13047| Best HMM Match : Pro_3_hydrox_C (HMM E-Value=7)              29   4.3  
SB_595| Best HMM Match : CH (HMM E-Value=0)                            28   7.5  
SB_14922| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.9  

>SB_57135| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 431

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 17/39 (43%), Positives = 22/39 (56%)
 Frame = +3

Query: 402 GCLHISKVLLRLSRIR*SCPFFRELHEFEMRFSSQILFV 518
           GC  IS V+LR       CP+F E+   E  FSS +LF+
Sbjct: 116 GCQRISAVMLRCVVKHSCCPYFAEVRGEEYVFSS-VLFI 153


>SB_13047| Best HMM Match : Pro_3_hydrox_C (HMM E-Value=7)
          Length = 271

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +1

Query: 466 LENCTSSKCVFLHKYSLYMSSEKKR 540
           LEN + ++C  LH Y  + S EKK+
Sbjct: 150 LENMSCARCRMLHHYQAFKSIEKKK 174


>SB_595| Best HMM Match : CH (HMM E-Value=0)
          Length = 905

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 15/35 (42%), Positives = 18/35 (51%)
 Frame = +3

Query: 192 PLSMHPKSDIQIDLTQVRIDILQGIRECNSRGLVQ 296
           P S  P +D  IDL  +RI +   I   N  GLVQ
Sbjct: 504 PSSFQPPADCPIDLITLRIGLFAKITIQNCPGLVQ 538


>SB_14922| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 505

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 14/26 (53%), Positives = 17/26 (65%)
 Frame = -1

Query: 435 VEVALC*CVGILFLRRYVLVQRXLKV 358
           V + LC  VGI  L RY+L QR LK+
Sbjct: 176 VTLVLCMAVGIGLLLRYLLRQRKLKM 201


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,268,983
Number of Sequences: 59808
Number of extensions: 339024
Number of successful extensions: 705
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 663
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 705
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1645141000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)