Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP01_F_K03
         (648 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g48150.1 68416.m05251 cell division cycle family protein / CD...    62   4e-10
At5g25370.1 68418.m03009 phospholipase D, putative (PLDZETA) ide...    33   0.12 
At3g58980.1 68416.m06574 F-box family protein contains two F-box...    27   8.1  
At2g30780.1 68415.m03753 pentatricopeptide (PPR) repeat-containi...    27   8.1  

>At3g48150.1 68416.m05251 cell division cycle family protein / CDC
           family protein similar to cell division cycle protein 23
           [Homo sapiens] GI:3283051, anaphase-promoting complex
           subunit 8 [Homo sapiens] GI:6180017; contains Pfam
           profile PF00515: TPR Domain
          Length = 579

 Score = 61.7 bits (143), Expect = 4e-10
 Identities = 30/79 (37%), Positives = 47/79 (59%)
 Frame = +1

Query: 373 LNEDITPEEKDAYTLAKCYFDCQEYDRAAHFLENCTSSKCVFLHKYSLYMSSEKKRLDNA 552
           L E+    + D Y LAK YFDC+EY RA+H L +  S K +FL  Y+LY++ EK++ +  
Sbjct: 84  LPEEDEAIDGDIYLLAKSYFDCREYRRASHMLRDQVSKKSLFLRYYALYLAGEKRKEEEM 143

Query: 553 TDLGTENSESXQVLLDLLS 609
            +L     +S  +  +L+S
Sbjct: 144 IELEGPLGKSDAINRELVS 162


>At5g25370.1 68418.m03009 phospholipase D, putative (PLDZETA)
           identical to phospholipase D zeta SP:P58766 from
           [Arabidopsis thaliana]; similar to phospholipase D
           [Lycopersicon esculentum] GI:12060550; contains Pfam
           profile PF00614: Phospholipase D. Active site motif
          Length = 820

 Score = 33.5 bits (73), Expect = 0.12
 Identities = 18/44 (40%), Positives = 27/44 (61%), Gaps = 3/44 (6%)
 Frame = -3

Query: 523 TCTKSICEEKRISNSCSSLKNGQLYRILD---SRSSTLLMCRHP 401
           T  K+  + KR+++SC+SL  G LY  +D   SR +  +M RHP
Sbjct: 38  TGKKTQSQIKRLTDSCTSLFGGHLYATIDLDRSRVARTMMRRHP 81


>At3g58980.1 68416.m06574 F-box family protein contains two F-box
           domains Pfam:PF00646
          Length = 594

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +1

Query: 442 EYDRAAHFLENCTSSKCVFLHKYSLYMSSEKKRL 543
           E ++  HFLE  +  K V LH  + + S +KK L
Sbjct: 395 EVEQLKHFLEKLSGLKLVKLHSLTRFGSDKKKLL 428


>At2g30780.1 68415.m03753 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 452

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 15/55 (27%), Positives = 26/55 (47%), Gaps = 3/55 (5%)
 Frame = +1

Query: 427 YFDCQEYDRAAHFLENCTSS---KCVFLHKYSLYMSSEKKRLDNATDLGTENSES 582
           YF C E D  A+F++   S+    C  L+   + M   +KR +    +  E +E+
Sbjct: 361 YFRCNEVDNLANFVKRAESAGWKLCRSLYHCKIMMYGSQKRFEEMEGVVNEMAET 415


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,759,869
Number of Sequences: 28952
Number of extensions: 236769
Number of successful extensions: 533
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 525
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 533
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1344285648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)